Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5320 143 6e-29 seq5634 134 3e-26 seq4085 86.0 1e-11 >seq5320 Length=807335 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| || || |||| || || ||| ||| Sbjct 503022 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCAGAC 503081 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| |||||| || |||||||| |||||||| ||| || || ||| Sbjct 503082 ACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAACAA 503141 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| || |||||| | ||||||||| ||||||| |||| || || | Sbjct 503142 AGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAATATT 503201 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||||| ||||| ||||| | ||||| || Sbjct 503202 CAGAAAGAGTCTACACTTCATCTTGTACTTCGACTTAGA 503240 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | |||||||| || ||||| |||||||| || || ||||| |||| Sbjct 502349 CAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCAGACACTATCGAGAA 502408 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| || |||||||| ||||| || ||| | |||| Sbjct 502409 TGTTAAAGCCAAA-ATTCAAGACAAGGAAGGAATCCCACCGGATCAGCAGAGATTGATCT 502467 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||||||||| ||| | |||||||| | || | | || |||||| | || ||||| | Sbjct 502468 TCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAACATTCAAAAAGAAT 502527 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 | || | || | |||||||| ||||| Sbjct 502528 CCACGTTGCATTTGGTTTTGAGGCTTCG 502555 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || |||||||| || ||||| |||||||| || || ||| Sbjct 501426 CAGATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCGGAC 501485 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| |||||||| ||||||||||| ||||| || Sbjct 501486 ACGATCGAGAATGTCAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCCCCGGATCAGCA 501544 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| | |||||||| |||||||| | |||||||| | || | | || |||||| | Sbjct 501545 GAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACACTTTCTGACTACAACAT 501604 Query 206352 CCAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 501605 TCAGAAAGAATCCAC 501619 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| | ||||| ||||| |||||||||||||| | ||||||||| | ||||| Sbjct 503240 TCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGT 503181 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||||||| |||||||| || ||||| || || | ||||||| Sbjct 503180 CCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGA 503135 Score = 96.9 bits (106), Expect = 8e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || |||||||| || ||||| |||||||| || || ||||| |||| Sbjct 501665 CAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCCGACACGATCGAGAA 501724 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| || |||||||| |||||||||||| ||||| || ||| | ||||| Sbjct 501725 TGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAGCAGAGATTGATCTT 501784 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||| || | |||||||| | || | | || ||||| | |||||||| || Sbjct 501785 CGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAATATTCAGAAAGAATC 501844 Query 206364 TAC 206366 || Sbjct 501845 CAC 501847 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || || ||| | ||||| || ||||||| Sbjct 501198 CAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGAC 501257 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| ||||| |||||| || || || ||||| ||| || || || Sbjct 501258 ACTATCGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAGCAG 501317 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||| ||||||||||| | || ||| | |||||||| | Sbjct 501318 CGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTACAATATT 501377 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| || ||||||||||| Sbjct 501378 CAGAAGGAATCTACTCTTCA 501397 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/189 (71%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | |||||||| || ||||| ||||||| || || ||||| | Sbjct 502115 TTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCAGACACGAT 502174 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| || ||| || |||||||| |||||||||||| ||||| || ||| | Sbjct 502175 CGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAGCAGAGATT 502234 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||||| ||||| || | |||||||| | || | | || ||||| | || || Sbjct 502235 GATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAATATTCAAAA 502294 Query 206358 AGAGTCTAC 206366 || ||||| Sbjct 502295 GGAATCTAC 502303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 |||||||| || ||||| ||||||| || || ||||| |||| || ||||| Sbjct 501903 ACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCAGACACTATCGAGAATGTTAAAGCC 501962 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| || |||||||| ||||| || ||| | |||||||||||||| Sbjct 501963 AAA-ATTCAAGACAAGGAAGGAATCCCACCGGATCAGCAGAGATTGATCTTCGCCGGAAA 502021 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 ||| | |||||||| | || | | || ||||| | |||||||| || || Sbjct 502022 ACAGCTCGAAGATGGCCGCACACTTTCTGACTACAATATTCAGAAAGAATCCAC 502075 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 |||||||| || ||||| |||||||| || || ||||| |||| || ||||| Sbjct 502815 ACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCGGACACGATCGAGAATGTTAAAGCC 502874 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| ||||| || || |||||||| || || || || | |||||||||||||| Sbjct 502875 AAA-ATTCAGGACAAGGAAGGAATACCTCCAGATCAGCAGAGGTTGATCTTCGCCGGAAA 502933 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || | |||||||| | || | | |||||||| | ||||| || || || | || Sbjct 502934 ACAACTTGAAGATGGTCGTACACTTTCTGATTACAATATTCAGAAGGAATCCACATTGCA 502993 Query 206373 CCTTGTTTTGAGACTTCG 206390 | |||||||| ||||| Sbjct 502994 TTTGGTTTTGAGGCTTCG 503011 >seq5634 Length=4821945 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| ||||| | ||||| ||| |||||||||| | ||| Sbjct 1939144 AAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCTGACACAATAGAAAAT 1939085 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| ||||| ||||| |||||||| ||| || ||| ||| | | |||||| Sbjct 1939084 GTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAACGTTTGATCTTC 1939025 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||||||||||| || ||||| | | || || ||| |||||||||| || Sbjct 1939024 GCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAACATCCAGAAAGAATCC 1938965 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| || | |||||| Sbjct 1938964 ACACTTCACCTGGTTCTGCGTCTTCGA 1938938 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || ||| | ||||| ||| ||| ||||| | ||| Sbjct 1938688 AAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCAGACACCATTGAAAAC 1938629 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301 |||||| || || ||||| |||||||||||| ||||| |||| || || || Sbjct 1938628 GTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGA---TCAACAGCGTTTGATT 1938572 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||| || || |||||||||| || ||| | |||||||||| |||||||||| Sbjct 1938571 TTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAATATCCAGAAAGAA 1938512 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || |||||||| ||| || | |||||| Sbjct 1938511 TCCACACTTCACCTGGTTCTGCGTCTTCGA 1938482 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || |||||||| ||| | ||||| ||| ||| || || ||||| Sbjct 1938460 AAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCAGATACCATCGAAAAT 1938401 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || |||||||||||| ||||| || | || || ||| Sbjct 1938400 GTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAACAGCGTCTGATTTTC 1938341 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || |||||||||| || ||| | | ||||||||| |||| ||||| || Sbjct 1938340 GCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACATCCAAAAAGAATCC 1938281 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||| | ||||| ||||||| Sbjct 1938280 ACACTCCACTTAGTTTTACGACTTCG 1938255 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||| | || ||| |||||||| || || |||||||||| ||| || || | | ||| Sbjct 1938482 TCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGT 1938541 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || ||||||||||| || || |||||||| || | || |||||| Sbjct 1938542 TCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGA 1938587 >seq4085 Length=6844556 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | || || || ||||| || |||| Sbjct 2742820 AAAACCCTCACGGGTAAAACTATTACCCTCGAGGTAGAGGCCTCTGATACCATCGAGAAT 2742761 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| || || || |||| |||||| Sbjct 2742760 GTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAACAGCGACTCATCTTC 2742701 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||||| || ||| |||| |||||| | |||||| | ||||||||| |||| |||| Sbjct 2742700 GCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCTGATTACAACATCCAAAAAG 2742646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181732430826956