Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016-
03-25] 5,836 sequences; 291,747,019 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq5320 143 6e-29
seq5634 134 3e-26
seq4085 86.0 1e-11
>seq5320
Length=807335
Score = 143 bits (158), Expect = 6e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| ||||| || ||||| || || |||| || || ||| |||
Sbjct 503022 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAGGCTTCAGAC 503081
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| ||||| |||||| || |||||||| |||||||| ||| || || |||
Sbjct 503082 ACGATCGAAAATGTAAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAACAA 503141
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
||||| || ||||| || |||||| | ||||||||| ||||||| |||| || || |
Sbjct 503142 AGACTGATTTTCGCGGGCAAGCAGCTAGAAGATGGACGGACTTTATCCGACTATAATATT 503201
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|||||||||||||| ||||| ||||| | ||||| ||
Sbjct 503202 CAGAAAGAGTCTACACTTCATCTTGTACTTCGACTTAGA 503240
Score = 107 bits (118), Expect = 5e-18
Identities = 150/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
|||||| | |||||||| || ||||| |||||||| || || ||||| ||||
Sbjct 502349 CAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCAGACACTATCGAGAA 502408
Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302
|| ||||| ||| |||||||| || |||||||| ||||| || ||| | ||||
Sbjct 502409 TGTTAAAGCCAAA-ATTCAAGACAAGGAAGGAATCCCACCGGATCAGCAGAGATTGATCT 502467
Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362
|||||||||| ||| | |||||||| | || | | || |||||| | || ||||| |
Sbjct 502468 TCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAACATTCAAAAAGAAT 502527
Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390
| || | || | |||||||| |||||
Sbjct 502528 CCACGTTGCATTTGGTTTTGAGGCTTCG 502555
Score = 105 bits (116), Expect = 2e-17
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || |||||| || |||||||| || ||||| |||||||| || || |||
Sbjct 501426 CAGATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCGGAC 501485
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || ||||| ||| |||||||| ||||||||||| ||||| ||
Sbjct 501486 ACGATCGAGAATGTCAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCCCCGGATCAGCA 501544
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
||| | |||||||| |||||||| | |||||||| | || | | || |||||| |
Sbjct 501545 GAGATTGATCTTCGCTGGAAAGCAACTTGAAGATGGTCGCACACTTTCTGACTACAACAT 501604
Query 206352 CCAGAAAGAGTCTAC 206366
|||||||| || ||
Sbjct 501605 TCAGAAAGAATCCAC 501619
Score = 102 bits (112), Expect = 2e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|| ||||| | ||||| ||||| |||||||||||||| | ||||||||| | |||||
Sbjct 503240 TCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGT 503181
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| ||||||||| |||||||| || ||||| || || | |||||||
Sbjct 503180 CCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGA 503135
Score = 96.9 bits (106), Expect = 8e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243
|||||| || |||||||| || ||||| |||||||| || || ||||| ||||
Sbjct 501665 CAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCCGACACGATCGAGAA 501724
Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||| || |||||||| |||||||||||| ||||| || ||| | |||||
Sbjct 501725 TGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAGCAGAGATTGATCTT 501784
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| ||||| || | |||||||| | || | | || ||||| | |||||||| ||
Sbjct 501785 CGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAATATTCAGAAAGAATC 501844
Query 206364 TAC 206366
||
Sbjct 501845 CAC 501847
Score = 95.1 bits (104), Expect = 3e-14
Identities = 141/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || | || || || || || ||| | ||||| || |||||||
Sbjct 501198 CAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGAC 501257
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| ||||| |||||| || || || ||||| ||| || || ||
Sbjct 501258 ACTATCGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGCATTCCACCTGATCAGCAG 501317
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| | ||||| || ||||||||| ||||||||||| | || ||| | |||||||| |
Sbjct 501318 CGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTGATTACAATATT 501377
Query 206353 CAGAAAGAGTCTACTCTTCA 206372
||||| || |||||||||||
Sbjct 501378 CAGAAGGAATCTACTCTTCA 501397
Score = 89.7 bits (98), Expect = 1e-12
Identities = 134/189 (71%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237
||||| |||||| | |||||||| || ||||| ||||||| || || ||||| |
Sbjct 502115 TTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCAGACACGAT 502174
Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|||| || ||| || |||||||| |||||||||||| ||||| || ||| |
Sbjct 502175 CGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAGCAGAGATT 502234
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
|||||||| ||||| || | |||||||| | || | | || ||||| | || ||
Sbjct 502235 GATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAATATTCAAAA 502294
Query 206358 AGAGTCTAC 206366
|| |||||
Sbjct 502295 GGAATCTAC 502303
Score = 86.0 bits (94), Expect = 1e-11
Identities = 125/174 (72%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|||||||| || ||||| ||||||| || || ||||| |||| || |||||
Sbjct 501903 ACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCAGACACTATCGAGAATGTTAAAGCC 501962
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
||| |||||||| || |||||||| ||||| || ||| | ||||||||||||||
Sbjct 501963 AAA-ATTCAAGACAAGGAAGGAATCCCACCGGATCAGCAGAGATTGATCTTCGCCGGAAA 502021
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366
||| | |||||||| | || | | || ||||| | |||||||| || ||
Sbjct 502022 ACAGCTCGAAGATGGCCGCACACTTTCTGACTACAATATTCAGAAAGAATCCAC 502075
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252
|||||||| || ||||| |||||||| || || ||||| |||| || |||||
Sbjct 502815 ACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCGGACACGATCGAGAATGTTAAAGCC 502874
Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312
||| ||||| || || |||||||| || || || || | ||||||||||||||
Sbjct 502875 AAA-ATTCAGGACAAGGAAGGAATACCTCCAGATCAGCAGAGGTTGATCTTCGCCGGAAA 502933
Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372
|| | |||||||| | || | | |||||||| | ||||| || || || | ||
Sbjct 502934 ACAACTTGAAGATGGTCGTACACTTTCTGATTACAATATTCAGAAGGAATCCACATTGCA 502993
Query 206373 CCTTGTTTTGAGACTTCG 206390
| |||||||| |||||
Sbjct 502994 TTTGGTTTTGAGGCTTCG 503011
>seq5634
Length=4821945
Score = 134 bits (148), Expect = 3e-26
Identities = 154/207 (74%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| ||||| | ||||| ||| |||||||||| | |||
Sbjct 1939144 AAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCTGACACAATAGAAAAT 1939085
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
||||| ||||| ||||| |||||||| ||| || ||| ||| | | ||||||
Sbjct 1939084 GTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAGCAACGTTTGATCTTC 1939025
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || || ||||||||||| || ||||| | | || || ||| |||||||||| ||
Sbjct 1939024 GCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAACATCCAGAAAGAATCC 1938965
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| |||||||| ||| || | ||||||
Sbjct 1938964 ACACTTCACCTGGTTCTGCGTCTTCGA 1938938
Score = 132 bits (146), Expect = 1e-25
Identities = 157/210 (75%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| || ||| | ||||| ||| ||| ||||| | |||
Sbjct 1938688 AAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCAGACACCATTGAAAAC 1938629
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATC 206301
|||||| || || ||||| |||||||||||| ||||| |||| || || ||
Sbjct 1938628 GTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGA---TCAACAGCGTTTGATT 1938572
Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
|||||||| || || |||||||||| || ||| | |||||||||| ||||||||||
Sbjct 1938571 TTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAATATCCAGAAAGAA 1938512
Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| || |||||||| ||| || | ||||||
Sbjct 1938511 TCCACACTTCACCTGGTTCTGCGTCTTCGA 1938482
Score = 120 bits (132), Expect = 7e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || |||||||| ||| | ||||| ||| ||| || || |||||
Sbjct 1938460 AAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCAGATACCATCGAAAAT 1938401
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || || || || |||||||||||| ||||| || | || || |||
Sbjct 1938400 GTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAACAGCGTCTGATTTTC 1938341
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||||| || || |||||||||| || ||| | | ||||||||| |||| ||||| ||
Sbjct 1938340 GCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACATCCAAAAAGAATCC 1938281
Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || ||| | ||||| |||||||
Sbjct 1938280 ACACTCCACTTAGTTTTACGACTTCG 1938255
Score = 84.2 bits (92), Expect = 5e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810
|||||| | || ||| |||||||| || || |||||||||| ||| || || | | |||
Sbjct 1938482 TCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGT 1938541
Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
|| ||||||||||| || || |||||||| || | || ||||||
Sbjct 1938542 TCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGA 1938587
>seq4085
Length=6844556
Score = 86.0 bits (94), Expect = 1e-11
Identities = 124/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| ||||| || ||||| || || | || || || ||||| || ||||
Sbjct 2742820 AAAACCCTCACGGGTAAAACTATTACCCTCGAGGTAGAGGCCTCTGATACCATCGAGAAT 2742761
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || || |||||| || || || |||| ||||||
Sbjct 2742760 GTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCACCAGATCAACAGCGACTCATCTTC 2742701
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359
||||| || ||| |||| |||||| | |||||| | ||||||||| |||| ||||
Sbjct 2742700 GCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCTGATTACAACATCCAAAAAG 2742646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181732430826956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |