Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5634 131 1e-25 seq5320 118 9e-22 seq5665 84.2 2e-11 >seq5634 Length=4821945 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | |||||||| || | || || ||| | ||||| ||||||||||||| Sbjct 1939388 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 1939329 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | ||||| |||||| ||||||||||| || || || ||||| Sbjct 1939328 GGACACCATTGAAAACGTAAAGGCCAAAATTCAAGATAAAGAGGGAATTCCCCCGGATCA 1939269 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| | ||||| ||||| ||||||| |||| | || |||||||| Sbjct 1939268 GCAGCGTCTGATTTTTGCTGGCAAGCAACTTGAAGATGGCAGAACTCTCTCTGATTACAA 1939209 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||||||||||| |||| || || Sbjct 1939208 TATTCAAAAAGAATCCACACTTCACTTGGT 1939179 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| |||| || ||||||||||||| Sbjct 1938475 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTCA 1938416 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||||| || ||||| || || || || ||||| Sbjct 1938415 GATACCATCGAAAATGTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGATCAA 1938356 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||||||||| ||||||| |||| | | |||||||| Sbjct 1938355 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 1938296 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| | || ||||| ||| || | | ||||| Sbjct 1938295 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGCGGAGG 1938249 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | || || ||||||||||||| Sbjct 1938703 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCA 1938644 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | ||||| ||||| |||||||| || || || || ||||| Sbjct 1938643 GACACCATTGAAAACGTAAAGGCCAAAATCCAAGATAAAGAAGGAATTCCACCGGATCAA 1938584 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || |||||||||||| ||||||| |||| | | |||||||||| Sbjct 1938583 CAGCGTTTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCCGATTACAAT 1938524 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || || ||||||||||| |||| Sbjct 1938523 ATCCAGAAAGAATCCACACTTCA 1938501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||||||||| | || |||||| | ||||| | || || ||||| Sbjct 1939616 CATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTC 1939557 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || ||||||||| | || ||| ||||| || ||||| ||||| || || ||||| Sbjct 1939556 TGACACTATCGAGAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATCA 1939497 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | | || |||||||| || |||| |||| | | || ||||| Sbjct 1939496 GCAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATGGCAGAACTCTTTCTGACTACAA 1939437 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 || || || ||||| || ||||| Sbjct 1939436 CATCCAGAAGGAATCTACGCTTCAT 1939412 >seq5320 Length=807335 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||||||||| ||||| | |||||| | ||||| || || Sbjct 502335 ATGCAAATTTTCGTCAAAACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 502394 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||||| | || ||| |||||| || || || || || || || |||||| Sbjct 502395 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 502454 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| ||||| |||||||||| | | | || ||||| Sbjct 502455 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAC 502514 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||||||||||||||| | ||||| || || || Sbjct 502515 ATTCAAAAAGAATCCACGTTGCATTTGGTTTTGAG 502549 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||||||||| ||||| | |||||| | ||||| || || Sbjct 502107 ATGCAAATTTTTGTCAAAACATTAACAGGAAAGACCATCACGCTGGAAGTTGAGGCGTCA 502166 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || |||||| || ||||| || || || || |||||| Sbjct 502167 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 502226 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || || |||||||| ||||||| | | | | || |||||| Sbjct 502227 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 502286 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| ||| | ||||| || Sbjct 502287 ATTCAAAAGGAATCTACCTTACATTTGGT 502315 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||||| || ||||| | |||||| | ||||| || || Sbjct 502791 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 502850 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| || || || || ||||| || |||||| Sbjct 502851 GACACGATCGAGAATGTTAAAGCCAAAATTCAGGACAAGGAAGGAATACCTCCAGATCAG 502910 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||| |||||||| ||||||| | | | | ||||||||| Sbjct 502911 CAGAGGTTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGTACACTTTCTGATTACAAT 502970 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389 ||||| || |||||||| | ||||| || || || Sbjct 502971 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAG 503005 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||||| || ||||| | |||||| | ||||| || || Sbjct 501879 ATGCAAATTTTCGTCAAGACATTGACAGGAAAGACAATCACGCTGGAAGTTGAGGCGTCA 501938 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||||| | || ||| |||||| || || || || || || || |||||| Sbjct 501939 GACACTATCGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGATCAG 501998 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || ||| ||||| |||||||||| | | | || |||||| Sbjct 501999 CAGAGATTGATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 502058 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||||||||| | ||||| || Sbjct 502059 ATTCAGAAAGAATCCACGTTGCATTTGGT 502087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || ||||| | ||||| | ||||| || || | Sbjct 501651 ATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTCC 501710 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||| || || || || |||||| Sbjct 501711 GACACGATCGAGAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGATCAG 501770 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | || || |||||||| ||||||| | | | | || |||||| Sbjct 501771 CAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTACAAT 501830 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||||||||| | ||||| || Sbjct 501831 ATTCAGAAAGAATCCACATTGCATTTGGT 501859 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | ||||| ||| | || || | ||||||||||| Sbjct 502563 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATTACTCTGGAAGTCGAAGCGTCG 502622 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || ||| |||||| || || || || || || || || ||| Sbjct 502623 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 502682 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || ||| |||||||| ||||| | | | | | || || ||| Sbjct 502683 CAGAGGTTAATCTTCGCCGGGAAACAACTTGAAGACGGTCGCACACTTTCTGACTATAAT 502742 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| ||||| ||| | ||||| || Sbjct 502743 ATTCAAAAGGAATCTACCTTGCATTTGGT 502771 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||| || ||||| || || || | || || | ||||| || || Sbjct 501191 CACCATGCAGATTTTTGTGAAGACATTGACTGGGAAGACCATAACTCTTGAAGTTGAGGC 501250 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||||||| | |||||| ||| || ||||| || || || || || || Sbjct 501251 TTCTGACACTATCGAGAATGTAAAAGCAAAGATCCAGGATAAGGAAGGCATTCCACCTGA 501310 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 |||||| | | || | | || || || || ||||||| | | |||| | || Sbjct 501311 TCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACCTTGTCTG--AT 501368 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||||| || ||||| || ||||||| || | |||||| | || |||| Sbjct 501369 TACAATATTCAGAAGGAATCTACTCTTCATTTGGTCCTCAGATTGCGTGGTGGAA 501423 >seq5665 Length=3828390 Score = 84.2 bits (92), Expect = 2e-11 Identities = 216/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTG 137449 |||| || ||||||||| || ||| ||| ||| | | | ||||||||||| Sbjct 3268437 TACCAATGGGTCTGTGTCTACTATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 3268496 Query 137450 CGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCGA 137509 |||| || | | ||| ||||| ||| |||| | | | ||| | | || |||| Sbjct 3268497 CGTCGATGACTTTATCTAGATTACGAGTGACGATTTTCGCGACTGTTTTAAGTTTATCGA 3268556 Query 137510 AATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGC 137569 |||| || |||| | | | | ||| || ||||||| || ||||| ||||| |||| Sbjct 3268557 AATCAAATGTTTTGGTGTCTATATTAATGAACATATTGACAGCGATAGATGCTAAATTGC 3268616 Query 137570 ATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTC 137629 |||| || ||| | | ||||| | |||||||| ||| | |||||| | Sbjct 3268617 ATACAGCGACTTCACCAGGACCAGAGTATTCAATAATTTCGGTGCACAAGTTGCTGCATT 3268676 Query 137630 GGATCACT-CCCAAATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTATATATCAT 137687 || || | || | || || ||||| | ||||| |||| |||||||| || | ||| Sbjct 3268677 TGA-CAGTGCCTATATGCTGATGATTCGATTTTC-GGTTGCAATGATCTTTGTAAAGCAT 3268734 Query 137688 ATACGGAGTTCCGGTTTCGACTTG 137711 ||| || ||||| ||||| ||||| Sbjct 3268735 ATAAGGTGTTCCAGTTTCTACTTG 3268758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445061930363520