Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq5320 125 6e-24 seq5634 93.3 4e-14 seq4085 87.8 2e-12 >seq5320 Length=807335 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| || || | |||||||| | ||| ||||| ||||| |||||||| | Sbjct 501423 TTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAG 501364 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||| || | || ||||||||||| || ||||| ||||| |||||||| || | | Sbjct 501363 ACAAGGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 501304 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| || ||||| ||| ||||||| || | | | | | ||||| | || | Sbjct 501303 GAATGCCTTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAA 501244 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || || || || ||||| || |||||||| |||||||| Sbjct 501243 CTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||||||||| | | |||||||| || ||| ||||||||||| || || || | Sbjct 502789 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAA 502730 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || || || || || || || || |||| ||||||||||| ||| Sbjct 502729 AGTGTGCGACCGTCTTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGG 502670 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| ||| || || | | | | | |||||| || ||| || Sbjct 502669 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGAC 502611 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| || | ||||| ||||| || ||||| Sbjct 502610 TTCCAGAGTAATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | | ||||||||||| ||| ||||||||||| ||||| || | Sbjct 502333 CCACCACGTAGACGAAGAACCAAATGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAA 502274 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || || || || || || ||||| | |||||| |||| ||| Sbjct 502273 AGTGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGA 502214 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || |||| | ||| ||| | ||| | | || | | |||||| || || || Sbjct 502213 ATTCCTTCTTTGT-CTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGACGCCTCAAC 502155 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || || || ||||| ||||| || ||||| Sbjct 502154 TTCCAGCGTGATGGTCTTTCCTGTTAATGTTTTGACAAAAATTTGCAT 502107 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || || || | |||||| |||||||| ||||| || |||||||||||||| || | Sbjct 502561 CCGCCGCGAAGCCTCAAAACCAAATGCAACGTGGATTCTTTTTGAATGTTGTAGTCAGAA 502502 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| || || || || ||||| | |||||| |||| || Sbjct 502501 AGTGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGG 502442 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||| | ||| ||| || || | | | | | ||||| || || || Sbjct 502441 ATTCCTTCCTTGT-CTTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAAC 502383 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| |||||| || || || || || ||||| || || || ||||| Sbjct 502382 TTCCAACGTGATGGTCTTTCCTGTTAATGTTTTGACGAAAATTTGCAT 502335 >seq5634 Length=4821945 Score = 93.3 bits (102), Expect = 4e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 35580 CGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCT 35639 |||| |||| ||| ||||| || || ||||| || |||||||| | ||||| || || | Sbjct 1939003 CGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTT 1939062 Query 35640 TGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGA 35699 |||| |||||| || | | || | | ||||| | ||| || || | |||| Sbjct 1939063 TGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGA 1939122 Query 35700 TCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||||||||| | |||||||||||| || ||||||| Sbjct 1939123 TAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATTC 1939161 Score = 82.4 bits (90), Expect = 7e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| ||||||||||| | | |||| | || ||||| || || || || || Sbjct 1938285 TCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAA 1938344 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||| || |||| |||| | || |||||| ||| || ||||| | || Sbjct 1938345 ATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTT 1938404 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| || || | || ||||||||||| || | ||||||||| Sbjct 1938405 TCGATGGTATCTGAAGCTTCGACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACG 1938464 Query 35726 AATATCTGCATTC 35738 || || ||||||| Sbjct 1938465 AAGATTTGCATTC 1938477 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||| |||||||| | | |||| | || || || ||||| || ||||| Sbjct 1939197 TCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAA 1939256 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 |||| |||||||| |||| |||| | ||| || || ||| ||| || || | | Sbjct 1939257 ATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCT-TGAATTTTGGCCTTTACGTT 1939315 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| || || | ||||| ||||||||||| | ||| || || Sbjct 1939316 TTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTAC 1939375 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 1939376 AAAGATCTGCAT 1939387 >seq4085 Length=6844556 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| ||||||||||| | ||| || || | || |||||||| || || || || || Sbjct 2742648 TTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 2742707 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | ||||| || || | |||| | |||||||||| |||||| ||| | | | | Sbjct 2742708 AGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 2742767 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | || || ||||||||||| | |||||||| || Sbjct 2742768 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGAAG 2742827 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 2742828 ATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450760714606880