Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5634 165 8e-36 seq5320 136 4e-27 >seq5634 Length=4821945 Score = 165 bits (182), Expect = 8e-36 Identities = 179/232 (77%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || ||||| || |||||||| || || || ||||| ||| Sbjct 1938475 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGG 1938534 Query 134545 CAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || || | || || || |||||||| || |||||||||||||| ||||| || Sbjct 1938535 AAAGAGTTCTGCCA-TCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGT 1938593 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || || |||||||| ||||| ||||| || | || | |||| ||||| || | ||| Sbjct 1938594 GGAATTCCTTCTTTATCTTGGATTTTGGCCTTTA-CGTTTTCAATGGTGTCTGAAGCTTC 1938652 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||||||||||||||||||||| | |||||| ||||| ||||||||| Sbjct 1938653 GACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 147 bits (162), Expect = 2e-30 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || | || || || ||||| ||||| ||||| ||||| Sbjct 1938703 TTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTC-- 1938760 Query 134545 CAACGGTGTGAGA--GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | | |||| | ||| || | |||||| || ||||| |||||||| ||||| || || Sbjct 1938761 CGAGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGG 1938820 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||||||||| ||||| || || ||| || || | |||||| || | ||| Sbjct 1938821 AGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTC 1938880 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| |||||||||||||| | |||||| ||||| ||||||||| Sbjct 1938881 AACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| || || | ||| || |||||||| ||||| |||||||| || | Sbjct 1938249 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 1938308 Query 134547 ACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || || |||||||| || ||||||| |||||| ||||| || || Sbjct 1938309 AGAGTTCTGCCA-TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 1938367 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| || || ||||| || || || | || || || | ||| || Sbjct 1938368 AATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGAC 1938427 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||||||||| ||||||||||| | |||||| ||||| ||||||||| Sbjct 1938428 TTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || |||| || || || ||||| |||||||| || ||||||||||| | Sbjct 1939389 CCTCCACGTAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAA 1939448 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | || | || || || ||||| || ||||| |||||||| |||||||| || || Sbjct 1939449 AGAGTTCTGCCA-TCCTCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGG 1939507 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| ||||| |||||| || | ||||| || | |||||| Sbjct 1939508 AATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCAC 1939567 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || | ||||| || || |||||||| Sbjct 1939568 CTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 Score = 132 bits (146), Expect = 5e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 ||||||||| || || | || | ||| || |||||||| |||||||| ||||| || | Sbjct 1939159 TTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAG 1939218 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | || | || || || || ||||| |||||||||| |||||||||||| || Sbjct 1939219 AGAGAGTTCTGCCA-TCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGG 1939277 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTC 134662 || || || ||||| ||||||||||| || | || | |||| ||||| || | ||| Sbjct 1939278 GGAATTCCCTCTTTATCTTGAATTTTGGCCTTTA-CGTTTTCAATGGTGTCCGAAGCTTC 1939336 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| || | ||| || || || || ||||| Sbjct 1939337 GACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || ||||| || |||||||| || || ||||| ||||| Sbjct 1938931 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTG 1938990 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | ||| || | |||||| || || || |||||||| ||||| || || | Sbjct 1938991 AGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 1939050 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | ||||||||||| ||||| || || ||| || || | |||||| || | ||| | Sbjct 1939051 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAA 1939110 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || || |||||||| || | |||||| || || ||||||||| Sbjct 1939111 CTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 >seq5320 Length=807335 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134516 CGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||||||| ||||||||||||||||| || ||| | || ||||||||||| || Sbjct 502532 CGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCC 502473 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || || ||||| | ||||||||| || || || ||||| || ||||||||||| ||| Sbjct 502472 GGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTT 502413 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||||| |||| || || || | || ||||| || || ||||| || Sbjct 502412 AACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTTAATGT 502353 Query 134696 TTTAACGAAAATTTGCAT 134713 ||| |||||||||||||| Sbjct 502352 TTTGACGAAAATTTGCAT 502335 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || |||||||||||||| || ||||| || ||| || ||| || || ||||| || Sbjct 502759 GTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCG 502700 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || || || | |||||| || || || || ||||| || ||||||||||| |||| Sbjct 502699 GCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTG 502640 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| |||| ||| || || |||||||| ||||||||||| | ||| Sbjct 502639 ACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTACCGGTAAGCGTT 502580 Query 134697 TTAACGAAAATTTGCAT 134713 || || ||||||||||| Sbjct 502579 TTGACAAAAATTTGCAT 502563 Score = 132 bits (146), Expect = 5e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 |||| || |||||||||||||| |||||||| || ||| || || || || ||| Sbjct 502309 TGTAAGGTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGT 502250 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || || || ||||| | ||||||||| || || || |||||||| ||||||||||| Sbjct 502249 TTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTG 502190 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||||| || | ||||| |||| || || || || || ||||| || || ||| Sbjct 502189 GCCTTGACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTTCCTGTT 502130 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 502129 AATGTTTTGACAAAAATTTGCAT 502107 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 |||||||| || ||||| |||||||| || ||| || || || || ||||| || Sbjct 501847 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCA 501788 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || ||||| | ||||||||| || || || |||||||| ||||||||||| ||| Sbjct 501787 GCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTG 501728 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||||||| || || || | || ||||| || || || | ||| Sbjct 501727 ACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTT 501668 Query 134697 TTAACGAAAATTTGCATT 134714 || ||||||||||||||| Sbjct 501667 TTGACGAAAATTTGCATT 501650 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 |||||||| || |||||||||||||| || ||| || || || || || || || Sbjct 501619 GTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGCTTTCCA 501560 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || ||||| | ||||||||| || || || |||||||| ||||||||||| |||| Sbjct 501559 GCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTG 501500 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| |||| || || || | || ||||| || || || | ||| Sbjct 501499 ACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGGTCTTTCCTGTCAGGGTT 501440 Query 134697 TTAACGAAAATTTGCATT 134714 || |||||||| |||||| Sbjct 501439 TTGACGAAAATCTGCATT 501422 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 134516 CGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCC 134575 ||||||||| || ||||| |||||||| || ||| | || ||||||||||| || Sbjct 502076 CGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCC 502017 Query 134576 TGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTT 134635 || || ||||| | ||||||||| || || || ||||| || ||||||||||| ||| Sbjct 502016 GGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTT 501957 Query 134636 GACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGT 134695 || || | ||||| |||| || || || || || || || || || || || || Sbjct 501956 AACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTTCCTGTCAATGT 501897 Query 134696 TTTAACGAAAATTTGCAT 134713 || |||||||||||||| Sbjct 501896 CTTGACGAAAATTTGCAT 501879 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| ||||| | || || || || || || || || ||||| || |||||| Sbjct 503246 TCCACCTCTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGA 503187 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | || || ||||| ||||| || ||||||| | || |||||||| || Sbjct 503186 TAAAGTCCGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGG 503127 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 ||||||||||| ||||||||||| || || || | ||||| || | || || Sbjct 503126 AATGCCTTCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGAC 503067 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| |||||||| || | |||||| || ||||| ||||| Sbjct 503066 CTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || || |||||||| ||||| ||||| || | ||| ||| | || || ||||| Sbjct 501397 TGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAA-GGTACGTCCATCTTCCAGCTG 501339 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| ||||||||||||||||| || || |||||||| || || || || || Sbjct 501338 CTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCCTTATCCTGGATCTT 501279 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||| || || | ||||| || | || || || ||||| ||||| || || || Sbjct 501278 TGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCAGT 501219 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| ||||| Sbjct 501218 CAATGTCTTCACAAAAATCTGCAT 501195 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 ||||||||||| ||||| ||||| || || || || || || || ||||| || Sbjct 502987 GTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCAAGTTGTTTTCCG 502928 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || ||||| | ||||||||| || ||||| ||||| || || |||||||| ||| Sbjct 502927 GCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCCTGAATTTTGGCTTTA 502868 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| |||| || || || | || ||||| || || || || || Sbjct 502867 ACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTC 502808 Query 134697 TTAACGAAAATTTGCAT 134713 || |||||||||||||| Sbjct 502807 TTGACGAAAATTTGCAT 502791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505361531186720