Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5738 96.9 5e-15 seq5665 91.5 2e-13 seq4511 91.5 2e-13 >seq5738 Length=4927432 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| ||| ||||| | Sbjct 2906131 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGGCACATTAGACT 2906072 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||||||||||||||| ||| ||||||||||||| || ||| |||| Sbjct 2906071 CCACACATCATCATCAAAAACACGTTTCATAAATAAATTTGGAGTCCA 2906024 >seq5665 Length=3828390 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||||||||||||||||||| || |||||| |||||| ||||||||| | |||| Sbjct 3268941 AATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGACACATTAGGCTCCAC 3269000 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGA 69639 | || |||| | || |||| |||||| ||||| || ||||| ||| | ||| | | Sbjct 3269001 ATCTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGACCGTAAAATAAA 3269060 Query 69640 TCTCT 69644 ||||| Sbjct 3269061 TCTCT 3269065 Score = 89.7 bits (98), Expect = 7e-13 Identities = 184/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | || ||||| || || | |||| | ||||| |||| || || || || | Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || ||| || | ||| |||||||| || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATCTCATTTT 3269675 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||||| || | || || | |||||||||||| ||||| | || || | ||| || Sbjct 3269676 CATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCAT 3269735 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||||| ||| || | | || || |||||||| |||| ||| || || ||| | Sbjct 3269736 TGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAAT 3269795 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTTATC 70235 | | ||||| || ||| |||||| ||||| || Sbjct 3269796 CACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 86.0 bits (94), Expect = 9e-12 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| ||| | | ||||||||| || || |||||| ||||| || || | | Sbjct 3267861 GTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTC 3267920 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || ||||| || ||||| ||||| | ||||| ||||| || | |||||| || || Sbjct 3267921 ACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCCTAAAATTTGTGCCGTC 3267980 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || |||||||||||||| | || | |||||| | || || | || || Sbjct 3267981 GAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTTCTTACTCCGTGCTTCGCAATCTTC 3268040 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 | || | | | ||||||||| | || | ||| ||| ||||| | ||| ||||| Sbjct 3268041 GCCTTCAATTTATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGG 3268100 Query 68926 AGAAT 68930 ||||| Sbjct 3268101 AGAAT 3268105 >seq4511 Length=1767931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| |||||||||| | | ||||| || ||||||||||| ||||| | ||| Sbjct 464242 TTTTCAAATCCTAATGCAACGAATAATCTGTCCGCAACAAATTCGATGTAATTACACATG 464301 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | |||||||||||| | || ||| || | || | ||||| ||| || ||||| Sbjct 464302 AATGTGTGATTCATTCCTATTAATTCAACCGGCAACGCTTGCGTTAAAAATTCCTTTTCA 464361 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || |||||||| || ||| || ||| | || |||| ||| || | | Sbjct 464362 ATTTCTACGGCGTCCATTACAATTGATTTCACACGCTCAAACGATGGTTTTTGTACGATG 464421 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 |||||||||||||| |||||||| || || |||| |||| Sbjct 464422 TGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCCCT 464461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686858690003040