Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4718 95.1 1e-14 >seq4718 Length=5897223 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||| ||||||| | ||||| | |||||| ||||| || || | || || || || Sbjct 5377544 CGTGAAAATGTATCTCGGACTGGCGGAATCCTTTCCACCAGCAAGTCTTGTACCGAATTG 5377603 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||||| | || || | ||||||| |||||||||||||| || | ||| || Sbjct 5377604 ACCGATGGGCTGTAACAGATTAATGTTGTTGCTACCCACGAAATTCTGCGCGAGATTAAC 5377663 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || || ||| | ||||||||| ||||| || | || || || | |||| Sbjct 5377664 TATGGTCGCCATCAGGGATGTTTCACCGTGATGATAAGCAGAATGTTCGGCAACAGATCC 5377723 Query 152208 CGCCAACTGCGCCACCTTCA 152227 |||||| ||||| || |||| Sbjct 5377724 CGCCAATTGCGCGACTTTCA 5377743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547176080592800