Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5320 109 4e-19 seq5634 87.8 1e-12 >seq5320 Length=807335 Score = 109 bits (120), Expect = 4e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| ||||| || ||| ||||| | || |||||| || | Sbjct 502563 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATTACTCTGGAAGTCGAA-GCGTC 502621 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| |||||| ||||| ||||| ||||| | || ||| Sbjct 502622 GGACACGATCGAGAAT--GTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCGGAC 502679 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| ||||||| || ||||| |||||| | || |||| |||| | || || || Sbjct 502680 CAGCAGAGGTTAATCTTCGCCGGGAAACAACTTGAAGACGGTCGCACACTTTCTGACTAT 502739 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || ||||| || || |||||||||||| | ||||| ||||| || Sbjct 502740 AATATTCAAAAGGAATCTACCTTGCATTTGGTTCTCCGTTTACGTGGTGG 502789 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| || || || || || ||| | || || || | Sbjct 501650 AATGCAAATTTTCGTCAAAACCCTGACAGGAAAGACCATCACATTGGAAGTTGAGGCGTC 501709 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| ||| | ||| ||||| ||||| ||||||||||| |||| ||| Sbjct 501710 CGACACGATCGAGAAT--GTCAAGGCCAAAATTCAAGACAAAGAAGGAATTCCCCCGGAT 501767 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| | || || || || ||||||||| | || || | |||| | || || ||| Sbjct 501768 CAGCAGAGATTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTAC 501827 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || ||||| ||| |||||||||||| | ||||| ||||| || Sbjct 501828 AATATTCAGAAAGAATCCACATTGCATTTGGTTCTCCGTTTACGTGGTGG 501877 >seq5634 Length=4821945 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||||||||| || || ||| || || |||| || ||| | | Sbjct 1938932 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 1938873 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| || || ||||||||||| |||| || || Sbjct 1938872 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 1938813 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| || ||||| || || |||| | | | || || || || Sbjct 1938812 GCAACGTTTGATCTTTGCTGGTAAACAGTTAGAGGACGGTAGGACACTCTCGGACTATAA 1938753 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||| || | ||||||||| ||||| | || || || Sbjct 1938752 CATCCAAAAAGAATCTACCCTTCATTTGGTTCTGCGTCTTCGAGGAGG 1938705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| || ||||| ||| || || |||| || ||| | Sbjct 1939615 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 1939556 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | | ||| |||||| ||||| |||||||||||| |||| || | Sbjct 1939555 GACACTATCGAGAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATTCCTCCAGATC 1939498 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATT 27964 ||||||| || || ||||| ||||||||| | || || | |||| || | || || | Sbjct 1939497 AGCAACGTTTGATCTTTGCTGGAAAACAACTAGAGGATG---GCAGAACTCTTTCTGACT 1939441 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| || || || | ||| | ||| ||||| | ||||| ||| Sbjct 1939440 ACAACATCCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTACGTGGAGGC 1939388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/221 (70%), Gaps = 10/221 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || ||||||||||| || || ||| ||||| | || |||||| | Sbjct 1938476 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACGATTACTCTCGAAGTCGAAGCTTC 1938417 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || | ||| || || ||||| ||||||||||| |||| ||| Sbjct 1938416 AGATACCATCGAAAAT--GTGAAGGCCAAAATCCAGGACAAAGAAGGAATTCCACCGGAT 1938359 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGAT 27963 || || || | ||||| ||||| |||||| |||| || | |||| || | || ||| Sbjct 1938358 CAACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATG---GCAGAACTCTTTCTGAT 1938302 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 ||||||||||||||||| ||| | || || ||||| || Sbjct 1938301 TACAACATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 1938261 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||||||||| || || ||| ||| || |||| || ||| | Sbjct 1939160 AATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 1939101 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| || || || ||| || || ||||||||||| |||| || || Sbjct 1939100 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 1939041 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || || || || ||||| ||||| |||| | | | || || || || Sbjct 1939040 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 1938981 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| ||| | || ||||| ||||| | || || || Sbjct 1938980 CATCCAGAAAGAATCCACACTTCACCTGGTTCTGCGTCTTCGAGGAGG 1938933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355837088841972