Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq5634 185 2e-41 seq5320 158 3e-33 seq4085 154 3e-32 >seq5634 Length=4821945 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| ||||| ||||| ||||||||||| || | || ||| Sbjct 1938939 CGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAGAGTGTC 1938998 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || ||||||| ||| || || |||||||| | ||||| ||||||||||||| ||| Sbjct 1938999 CTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCT 1939058 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| || ||||| || |||||||| |||||| || || Sbjct 1939059 TCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGG 1939118 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || ||||||||||| || ||||| | |||||| Sbjct 1939119 GTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 179 bits (198), Expect = 9e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 1938255 CGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTT 1938314 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| || ||||| ||||| || || || ||||| || || |||| |||| Sbjct 1938315 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCT 1938374 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||| || ||||| ||||||||||| || || ||| || |||||| Sbjct 1938375 TCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGA 1938434 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || |||||||| || || || | |||||| Sbjct 1938435 GTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938476 Score = 170 bits (188), Expect = 4e-37 Identities = 171/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||||| || || ||||||||||||||||| |||| || ||| Sbjct 1938711 CGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTC 1938770 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || || || || | ||| || || || ||||| | ||||| ||||||||||||| ||| Sbjct 1938771 CTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCT 1938830 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||| |||||||| || ||||||||| |||||| || ||| Sbjct 1938831 TCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGA 1938890 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || |||||||| || || || | |||||| Sbjct 1938891 GTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || |||||||| ||||| ||||| ||||| || ||||| | ||| || Sbjct 1938483 CGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTAATCGGAAAGAGTT 1938542 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || ||||||||||| || ||||| ||||| || | || ||||| || || |||| |||| Sbjct 1938543 CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGATCCGGTGGAATTCCT 1938602 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || ||||| || || |||||||| |||||||| || ||| || |||||| Sbjct 1938603 TCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACTTCGAGA 1938662 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || |||||||| || || || | |||||| Sbjct 1938663 GTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938704 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | |||||| ||||| |||||||| || || ||||| | || || Sbjct 1939167 CGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTT 1939226 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||| || |||||||| || || || || || || || || || |||| ||| Sbjct 1939227 CTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCC 1939286 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || || || || || |||||||| |||||||| || ||| || ||||| Sbjct 1939287 TCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGG 1939346 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| |||||||||||||| | |||||| Sbjct 1939347 GTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 >seq5320 Length=807335 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| | ||| ||||| | |||||||| || || || || || || ||||| | | ||| Sbjct 501416 ACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGT 501357 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||||||| || || ||||| | || || || ||||| |||| || Sbjct 501356 ACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCC 501297 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| |||||||||||| ||| || || ||||| |||||||| ||||| || || Sbjct 501296 TTCCTTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAG 501237 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| || || | ||||| ||||| | |||||| Sbjct 501236 AGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 ||||| || ||||| ||||| || |||||||| || || ||||| || | | |||| Sbjct 503237 AAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCG 503178 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| ||||||||||| ||||| || || | |||||| || ||||||| ||||| Sbjct 503177 TCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTC 503118 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || || || || || || |||||||| ||||| || || ||||| || || Sbjct 503117 TTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGT 503058 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || |||||||| || ||||| | |||||| Sbjct 503057 AATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||| || || || || || | ||| || | |||||||| ||||| || || Sbjct 502075 GTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCG 502016 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || || || | |||||||||||| || || || ||| Sbjct 502015 GCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTA 501956 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||||| || || ||||| |||||||| || | ||| Sbjct 501955 ACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGTCTTTCCTGTCAATGTC 501896 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 501895 TTGACGAAAATTTGCAT 501879 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| |||||||| ||||| || || | ||| || | |||||||| ||||| || || Sbjct 502531 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCG 502472 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || || || | |||||||||||| || || || ||| Sbjct 502471 GCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTA 502412 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||||| || | ||||| |||||||| || | || Sbjct 502411 ACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTTAATGTT 502352 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 502351 TTGACGAAAATTTGCAT 502335 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || || || || || ||||| | ||| || | |||||||| || || || || Sbjct 502987 GTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCAAGTTGTTTTCCG 502928 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || || || ||||| | ||||||||||||||| || || ||| Sbjct 502927 GCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCCTGAATTTTGGCTTTA 502868 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||||| || | ||||| |||||||| || | ||| Sbjct 502867 ACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTC 502808 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 502807 TTGACGAAAATTTGCAT 502791 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || ||||| || ||||| || | ||| || | || ||||| || || || || Sbjct 502759 GTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTCTTCAAGTTGTTTCCCG 502700 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | || ||||| ||||| | |||||||||||| || || || ||| Sbjct 502699 GCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTG 502640 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||| ||||| || ||| || || ||||| || || || || || || || Sbjct 502639 ACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGTTTTACCGGTAAGCGTT 502580 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 502579 TTGACAAAAATTTGCAT 502563 >seq4085 Length=6844556 Score = 154 bits (170), Expect = 3e-32 Identities = 148/190 (78%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||||||||| ||||| | | || | |||||| |||||||| ||||| ||||||| Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | || || ||||| || || |||| ||| ||||||||||||||||| || || || | Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 ||||||| |||||| || |||||||| || || || || |||||||| || || || | Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 211105 ACACCTGCAT 211114 | | |||||| Sbjct 2742826 AGATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159065325858140