Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5665 122 1e-22 seq4511 91.5 2e-13 seq5738 87.8 2e-12 >seq5665 Length=3828390 Score = 122 bits (134), Expect = 1e-22 Identities = 194/276 (70%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 78370 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 |||| | || ||||| || || | | ||| | ||||| |||| || || || |||| Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 78430 GCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCAT 78488 | ||||| || ||| || || || ||| |||||||| || || || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 78489 TGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTA 78548 | |||||| || || ||||| | |||||||||||| ||||| || || || ||||| | Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 78549 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 78608 || ||||||| || || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 78609 TCTCTCTCGTAAATAATAACAGAATTTAGTTTATCT 78644 || | ||||| || ||| |||||| ||||| ||| Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTCT 3269830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 192/280 (69%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCT-CTG-TTAAAACTCTAAGGAGATGAGGAT 77118 ||||| ||||| || | ||| | ||||| ||| ||||| ||| | | ||| |||| Sbjct 3267828 TTCTTCATATCTTCGTCCCATAGA--CCTCTACTGGTTAAATCTCGCAATAAATGCGGAT 3267885 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || |||||||||||||||||| | | || ||||| || ||||| |||| Sbjct 3267886 TGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTT 3267945 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||| || || || |||||||| || || || || |||||||||||||| | | Sbjct 3267946 CAATGGATTCGTTATTCCCTAAAATTTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTA 3268005 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | | |||||| | || || | || || | || | | | ||||||||| | Sbjct 3268006 AAAGCGAATTTCTTACTCCGTGCTTCGCAATCTTCGCCTTCAATTTATCCCAATCCCATA 3268065 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || ||| ||| | ||| | ||| ||||| ||||| Sbjct 3268066 AATTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 3268105 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||||||||||||||||||||| || || || | ||||||||||||| | Sbjct 3270040 CACTAAAACTTTTTTTTGTTTCCTTGTGTAGGTTGGACACGTCAATTCTTGCAGCTAATA 3270099 Query 78802 TAGCATAATCAGGATGTT 78819 |||||||||||||||||| Sbjct 3270100 TAGCATAATCAGGATGTT 3270117 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/131 (76%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 || |||||||||||||||||||||| || ||||| |||||| ||| ||||| | Sbjct 3268937 TTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGACACATTAGGCT 3268996 Query 77984 CCAGTCACCATCTTCCTTA---ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||| || | || || ||| || |||| |||||| ||||| |||||||||||| | Sbjct 3268997 CCA--CATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGACCGTA 3269053 Query 78041 AAATAGATCTC 78051 ||||| ||||| Sbjct 3269054 AAATAAATCTC 3269064 >seq4511 Length=1767931 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/199 (70%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || ||||||||||| || || || ||||| || || ||||| | ||||| Sbjct 465841 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 465900 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || | ||||| | |||| ||| || ||||||||| || || ||||| | Sbjct 465901 GGAATTTTCACCTCTTGGCTGAATCTCTCAATCAGATTCTCATTAACGATACCATCGGAA 465960 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAG---TTTA 48608 || ||||| |||||||| ||||| ||||| | ||| || | |||| | || || | Sbjct 465961 GCGGCAAAGAATGCTAAGACATGAGAGATAAAGTGTTTCTCATCGGAATTTAGCTTTTCA 466020 Query 48609 TTCCAGTCATTGATATCTT 48627 ||||| || || | |||| Sbjct 466021 TTCCAATCCTTTTTGTCTT 466039 >seq5738 Length=4927432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || ||||||| | ||| ||||| | |||||||||||| |||| ||| ||||| || |||| Sbjct 2905064 CACCACTAAAAACTTTCTTTGTCTGCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTA 2905005 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | |||||||| |||||||| || | | | ||||| |||| || || || ||| Sbjct 2905004 AGGTTGCATAATCTGGATGTTGATTAATCATAATCGCTGCAGTTTCAGCTGCCAAGTTAT 2904945 Query 78859 CTAACTCTATAGTTGTGACCCCA 78881 | || || | ||||| || ||| Sbjct 2904944 CCAATTCGCTTGTTGTCACTCCA 2904922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694618123911040