Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5665 105 1e-17 >seq5665 Length=3828390 Score = 105 bits (116), Expect = 1e-17 Identities = 190/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 76965 GAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCAT 77024 |||| | || ||||| || || | | ||| | ||||| || | || || || |||| Sbjct 3269556 GAAATTACCTGGACATCTGTTGGTTATTAGTACAGGCATTGAATAGAGTTGGTGAAGCAT 3269615 Query 77025 GAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCAT 77083 | || || || ||| || || || ||| |||||||| || ||| || || || | Sbjct 3269616 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATCTCATTT 3269674 Query 77084 TGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTA 77143 | |||||| || ||||| || | |||||||||||| ||||| | || || ||||| | Sbjct 3269675 TCATGAATACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCA 3269734 Query 77144 TTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 77203 || ||||||| || || | | || | ||||||||||||| ||| || || ||| Sbjct 3269735 TTGATTTTCAGCAGATAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTAAAA 3269794 Query 77204 TCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 || | ||||| || ||| | |||| ||||| || Sbjct 3269795 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3269829 Score = 96.9 bits (106), Expect = 5e-15 Identities = 169/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 75688 GGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCG 75747 ||||||| ||| | | ||| ||||| ||||| |||||||||||||||||| | | Sbjct 3267860 GGTTAAATCTCGCAATAAATGCGGATTGACAATGATAAATTCTCCAGACAATACGCGCCT 3267919 Query 75748 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807 || ||||| || ||||| ||||| | ||||| || || || |||||||| || || Sbjct 3267920 CACATATATATTGCTTGTATACGGTTCAATGGATTCGTTATTCCCTAAAATTTGTGCCGT 3267979 Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867 || || || ||||||||||| | || | |||||| | || || | || || Sbjct 3267980 CGAGGCCGTTGGCATAGGTGCTATTAAAAGCGAATTTCTTACTCCGTGCTTCGCAATCTT 3268039 Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTG 75927 | || | | | ||||||||| | || || ||| ||| | ||| | ||| ||||| Sbjct 3268040 CGCCTTCAATTTATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTG 3268099 Query 75928 TAGAAT 75933 ||||| Sbjct 3268100 GAGAAT 3268105 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTT---CAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 |||||| |||||||||| |||||| |||||| ||||||||| || ||||| ||||| Sbjct 3268202 ATATGTCTCGTAAGTCC---CCTTTTCCGCAGCTAATTCGCAACTAGCTTCTAAGGCACC 3268258 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 ||||||| |||||||| || || | || || |||| |||||| || || || || Sbjct 3268259 ATAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCTTCTTTGCTCTCGAAGGG 3268318 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 ||| | | | | || ||||| ||||| || || | ||| ||||| Sbjct 3268319 ATATCGCATTAACAGGAACGCATCGGCTAGACCTTGTATTCCTATACC 3268366 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Plus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || |||||||||||||||||||||| || |||||| |||||| ||| Sbjct 3268926 GTATACAATTCTTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGA 3268985 Query 76568 CACATCAATGACCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATC 76624 ||||| | | | | || | || || ||| || |||| |||||| ||||| |||||| Sbjct 3268986 CACATTA--GGCTCCACATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATC 3269042 Query 76625 CATAGAGCAATAAATAGATCTC 76646 |||||| | ||||| ||||| Sbjct 3269043 CATAGACCGTAAAATAAATCTC 3269064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712882391435520