Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5634 143 6e-29 seq5320 138 3e-27 seq4085 131 4e-25 >seq5634 Length=4821945 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || || |||||||||||||||||||| | | |||||| |||||||| || | Sbjct 1938273 TGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGT 1938332 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || || | ||| || |||| | |||||||| || || || ||||| Sbjct 1938333 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTGTCCTGGATTTTG 1938392 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || ||| | || | | | |||||| || ||||| |||||||| ||||| || ||| Sbjct 1938393 GCCTTCACATTTTCGATGGTATCTGAAGCTTCGACTTCGAGAGTAATCGTTTTACCGGTG 1938452 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 ||||| |||||||||| |||||| Sbjct 1938453 AGAGTTTTCACGAAGATTTGCATT 1938476 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| ||||| || || ||||||||||| || | | |||||| ||||| Sbjct 1939404 AGAACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCC 1939463 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| ||| || || ||||| | | ||||| || | | || ||||| || ||| Sbjct 1939464 TCTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCT 1939523 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || ||||| ||||||| |||| | |||| ||| || || ||||| || || ||| Sbjct 1939524 TGGATTTTAGCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTT 1939583 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || |||| ||||| Sbjct 1939584 TTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 1939615 Score = 120 bits (132), Expect = 7e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || |||||||| || |||||||| | | |||||| |||||||| | Sbjct 1939181 CAAG-TGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAGAGAGTTCTGCCATCTTCAA 1939239 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || || | |||||| |||| | ||||| || || ||||||| Sbjct 1939240 GTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTATCTTGAA 1939299 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| || || | || | | |||| ||| || ||||| || || || ||||| | Sbjct 1939300 TTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTGATGGTTTTAC 1939359 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| |||||||| || |||| |||||| Sbjct 1939360 CCGTAAGAGTCTTTACAAAGATCTGCAT 1939387 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||| || || ||||| |||||||| || || | | || || || ||| Sbjct 1938948 AGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATAGTCTGAGAGTGTCCTACCGTCT 1939007 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || |||||||| | | |||||||| | | || ||||| || ||| Sbjct 1939008 TCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCT 1939067 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| ||| | |||| |||| ||| || |||||||| || |||||| Sbjct 1939068 TGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTT 1939127 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||||||||| ||||| |||| |||||| Sbjct 1939128 TTACCCGTGAGAGTTTTCACAAAGATTTGCATT 1939160 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| ||||| |||||||||||||| || || | | || || || || Sbjct 1938720 AGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATAGTCCGAGAGTGTCCTACCGTCC 1938779 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 |||| ||| || || ||||| | | |||||||| | | || ||||| || ||| Sbjct 1938780 TCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTTGTCT 1938839 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| || | |||| |||| || || ||||||||||| || ||| Sbjct 1938840 TGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGTGATGGTT 1938899 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || |||||||| |||||||||| |||||| Sbjct 1938900 TTACCGGTGAGAGTTTTCACGAAGATTTGCATT 1938932 >seq5320 Length=807335 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || ||||||||||| ||||||||||| || || || || |||| |||||| Sbjct 503239 CTAAGTCGAAGTACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTC 503180 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||||||||| || || ||||| || || || || || || | | || ||| Sbjct 503179 CGTCCATCTTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCT 503120 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||||||||| || ||| | || | |||||||| ||| || || || Sbjct 503119 TCTTTATCTTGAATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGC 503060 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || |||||||| || || || | |||||| Sbjct 503059 GTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||||| || ||||| || || || || | | || | || || Sbjct 502775 GAGAACCAAATGCAAGGTAGATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGACCGTC 502716 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||||||||||||||| | |||||||||||||| | |||||||||||| || Sbjct 502715 TTCAAGTTGTTTCCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC 502656 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||||||| |||| | |||| || || ||||| |||||||| || Sbjct 502655 TTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAGAGTAATTGT 502596 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || | ||||| Sbjct 502595 TTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 502563 Score = 122 bits (134), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | |||||||||||| || || || || |||||||| | || || | || Sbjct 501410 TCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATCAGACAAGGTACGTCC 501351 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| || || ||||| | | |||||| || | | || |||||| Sbjct 501350 ATCTTCCAGCTGCTTT--CCAGCAAAGATCAAACGCTGCTGATCAGGTGGAATGCCTTCC 501293 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || ||| ||| ||| |||| | |||| ||| ||| ||||||||||| Sbjct 501292 TTATCCTGGATCTTTGCTTTTACATTCTCGATAGTGTCAGAAGCCTCAACTTCAAGAGTT 501233 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | |||||||| || | |||||| Sbjct 501232 ATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCAT 501195 Score = 116 bits (128), Expect = 9e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| | || || ||||| || |||||||| || | | || | |||||| Sbjct 501634 AGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAAAGTGTGCGACCATCT 501575 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| | |||||||| |||| | ||||||||| || | Sbjct 501574 TCAAGTTGCTTT--CCAGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGT 501517 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||||||| ||||||| |||| | |||| || ||| ||||| | || || | Sbjct 501516 CTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAATGTGATGG 501457 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || || ||||| | ||||||| Sbjct 501456 TCTTTCCTGTCAGGGTTTTGACGAAAATCTGCATT 501422 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || ||||| || || ||||| || | | || | ||||| Sbjct 502091 GAGAACCAAATGCAACGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATC 502032 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||||||||| | |||||||| |||| | |||||||||||| || Sbjct 502031 TTCGAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTC 501972 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| ||| |||| | ||||||| ||| ||||| || || || || Sbjct 501971 TTGAATTTTGGCTTTAACATTCTCGATAGTGTCTGACGCCTCAACTTCCAGCGTGATTGT 501912 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||||| ||||| | ||||| Sbjct 501911 CTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 501879 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| |||||||| || | | || | |||||||| || ||| ||| Sbjct 502531 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTTCCG 502472 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | |||||||| |||| | |||||||||||| ||||||||||| ||| Sbjct 502471 GCGAAGATCAATCTCTGCTGATCCGGTGGGATTCCTTCCTTGTCTTGAATTTTGGCTTTA 502412 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | ||||||| ||| ||||| | || || || || || || | || Sbjct 502411 ACATTCTCGATAGTGTCTGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTTAATGTT 502352 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 502351 TTGACGAAAATTTGCAT 502335 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || || || || || |||||||| | | || | |||||||| || ||| ||| Sbjct 502987 GTGGATTCCTTCTGAATATTGTAATCAGAAAGTGTACGACCATCTTCAAGTTGTTTTCCG 502928 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | ||||||||| || | | ||||||||||| || |||||||| ||| Sbjct 502927 GCGAAGATCAACCTCTGCTGATCTGGAGGTATTCCTTCCTTGTCCTGAATTTTGGCTTTA 502868 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | |||| || ||| ||||| | || || || || || || | ||| Sbjct 502867 ACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTTCCTGTCAATGTC 502808 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||| | ||||| Sbjct 502807 TTGACGAAAATTTGCAT 502791 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || || ||||| || || ||||| || | | || | ||||| Sbjct 501863 GAGAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATC 501804 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | |||||||| |||| | |||||||| || || Sbjct 501803 TTCAAGTTGTTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTC 501744 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| |||||| |||| | |||| || ||| ||||| | || || || Sbjct 501743 TTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGACGCCTCAACTTCCAATGTGATGGT 501684 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || ||||| | |||||| Sbjct 501683 CTTTCCTGTCAGGGTTTTGACGAAAATTTGCATT 501650 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || ||||| || ||||| || | | || | |||||||| || ||| || Sbjct 502303 GTAGATTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGTTGTTTTCCA 502244 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| | |||||||| |||| | |||||||| || ||||||||||| ||| Sbjct 502243 GCGAAGATCAATCTCTGCTGATCCGGGGGAATTCCTTCTTTGTCTTGAATTTTGGCCTTG 502184 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | ||||||| ||| ||||| || || || || || || || | || Sbjct 502183 ACATTTTCGATCGTGTCTGACGCCTCAACTTCCAGCGTGATGGTCTTTCCTGTTAATGTT 502124 Query 152088 TTCACGAAGACCTGCAT 152104 || || || | ||||| Sbjct 502123 TTGACAAAAATTTGCAT 502107 >seq4085 Length=6844556 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 ||||||||||||||||||| | ||||| | ||||| || || ||| |||||||||| Sbjct 2742646 CTTTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 2742705 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||| || || | | ||||| ||||| || || || || |||||| ||| Sbjct 2742706 TGAGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 2742765 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | | || || |||||| || || ||||||||||| |||||||| || ||||||| Sbjct 2742766 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGA 2742825 Query 152095 AGACCTGCAT 152104 ||| |||||| Sbjct 2742826 AGATCTGCAT 2742835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153734524491956