Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq5634 114 9e-21 seq5320 107 1e-18 seq4085 107 1e-18 >seq5634 Length=4821945 Score = 114 bits (126), Expect = 9e-21 Identities = 168/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||| ||| || || ||||| ||||| Sbjct 1938470 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATATTGTA 1938529 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| ||||| | | || ||||| || || ||||| || ||||||||||| ||| Sbjct 1938530 ATCGGAAAGAGTT--CTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAAACGCTGTTGA 1938587 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | ||||| || || || || ||| | || | |||||||| | Sbjct 1938588 TCCGGTGGAATTCCTTCTTTATCTTGGATTTTGGCCTTTACGTTTTCAATGGTGTCTGAA 1938647 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || ||||| || ||||||||||||||||| Sbjct 1938648 GCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938703 Score = 114 bits (126), Expect = 9e-21 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCGT 44186 || || |||||||| ||||| ||||||||||| || | ||||| || | || | Sbjct 1939407 ACAAGATGAAGCGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTTCT-GC-CATCCT 1939464 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 | || || || || |||||||||||||| |||||||||| ||| | |||||| || || Sbjct 1939465 CTAGTTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTT 1939524 Query 44247 TTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || |||| | ||| | || ||||| | | ||||||||| | || || || Sbjct 1939525 GGATTTTA-GCTTTGACATTCTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTT 1939583 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| |||||||| || || |||||||||||||| Sbjct 1939584 TTTCCAGTGAGGGTTTTTACAAAGATTTGCATGAT 1939618 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || |||| ||||| || || ||||||||||| || Sbjct 1938698 TTGCATTCCTCCTCGAAGACGCAGAACCAAATGAAGGGTAGATTCTTTTTGGATGTTATA 1938757 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | |||| | |||| || | ||| || || |||||||||||||| ||||| || Sbjct 1938758 GTCCGAGAGTGTCCTACCGTCCTCTAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTC 1938817 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGG 44282 | ||| | ||||| || || ||||| |||| | | || |||| ||||| | || Sbjct 1938818 AGGAGGAATGCCTTCTTTGTCTTGGATCTT-AGCTTTTACGTTTTCTATTGTGTCAGAGG 1938876 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || || || ||||| || ||||||||||||||||| Sbjct 1938877 CTTCAACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938931 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | || ||||||||||| ||| || || |||||||| || Sbjct 1938926 TTGCATTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTCTGGATGTTATA 1938985 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | |||| | |||| |||| ||| || || || ||||||||||| ||||| || Sbjct 1938986 GTCTGAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTC 1939045 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | ||||| || || ||||| || | || |||| ||||| | | Sbjct 1939046 AGGAGGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGC 1939105 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || || |||||||| || ||||| ||||||||||| Sbjct 1939106 TTCAACTTCAAGGGTGATAGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 1939159 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||| || || | ||| || ||| || ||||||||||||||||| Sbjct 1938245 CATACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATC 1938304 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| || | || ||||| || || ||||| || |||| |||||| ||||| Sbjct 1938305 AGAAAGAGTTCT-GC-CATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCC 1938362 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||| || ||| || || ||||| || | ||||| || | | | Sbjct 1938363 GGTGGAATTCCTTCTTTGTCCTGGATTTTGGCCTTCACATTTTCGATGGTATCTGAAGCT 1938422 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | |||||||| || || ||||| || ||||||||||||||||| Sbjct 1938423 TCGACTTCGAGAGTAATCGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 1938475 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | | |||| |||||| ||| || ||||| || ||||| Sbjct 1939154 TTGCATTCCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTA 1939213 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| | | || || || ||||| || ||||| |||| |||||||||||| Sbjct 1939214 ATCAGAGAGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATC 1939273 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | || | || || || || || || ||| | || | |||||||| | | Sbjct 1939274 CGGGGGAATTCCCTCTTTATCTTGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGC 1939333 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || || | || || || || ||||| || ||||| || ||||| |||||| Sbjct 1939334 TTCGACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 1939388 >seq5320 Length=807335 Score = 107 bits (118), Expect = 1e-18 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | || ||| | |||| ||||| || ||||| || || |||||||| Sbjct 501425 CATTCCACCACGCAATCTGAGGACCAAATGAAGAGTAGATTCCTTCTGAATATTGTAATC 501366 Query 44167 GG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | | || | || | || ||||||||||| || ||||||||||||||||||||||| | Sbjct 501365 AGACAAGGTA-CGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAG 501307 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | |||||||| ||| ||||| ||||| | ||| | || ||||| | | Sbjct 501306 GTGGAATGCCTTCCTTATCCTGGATCTT-TGCTTTTACATTCTCGATAGTGTCAGAAGCC 501248 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || | || || ||||| || || | |||||||| || || |||||| || Sbjct 501247 TCAACTTCAAGAGTTATGGTCTTCCCAGTCAATGTCTTCACAAAAATCTGCATGGTG 501191 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || ||||| |||| || | ||| ||||| || || |||||||| Sbjct 503021 CATACCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATC 502962 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || || || || || ||||| |||||||| | ||||||||||| Sbjct 502961 AGAAAGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGG 502902 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| | | || |||| || ||| | || ||||| | | | Sbjct 502901 AGGTATTCCTTCCTTGTCC-TGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCT 502843 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||| || |||||||| || | ||||| ||||| |||||||| Sbjct 502842 CAACTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 >seq4085 Length=6844556 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44150 TTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATC 44209 ||||||||||||||||| | | ||| | || |||||||| || ||||| ||||| Sbjct 2742648 TTTTGGATGTTGTAATCAGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 2742707 Query 44210 AAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT 44269 | ||||| ||||||| || | || ||||| ||| ||||| ||| | | | Sbjct 2742708 AGTCGCTGTTGATCTGGTGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 2742767 Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 ||||| || | || || ||||| | ||||| || || ||||||||||| ||||||||| Sbjct 2742768 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATAGTTTTACCCGTGAGGGTTTTCACGAAG 2742827 Query 44330 ATTTGCATGATG 44341 || |||||| || Sbjct 2742828 ATCTGCATGGTG 2742839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359964795232812