Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20septentrionalis_20[refseq_20GCF_5F001594115.1_202016- 03-25] 5,836 sequences; 291,747,019 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5320 107 2e-18 seq5634 86.0 6e-12 >seq5320 Length=807335 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | |||||||||| ||| || ||||||||||| ||||| || Sbjct 501649 CCACCACGTAGACGAAGGACCAGATGCAATGTGGATTCTTTCTGAATGTTGTAGTCAGAA 501590 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || || ||||| || ||||| |||| | ||| || |||| ||| Sbjct 501589 AGTGTGCGACCATCTTCAAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGGGGG 501530 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| |||| || | | ||||| || ||| || Sbjct 501529 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTGACATTCTCGATCGTGTCCGACGCCTCAAC 501471 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || ||||| || || |||||||||||||| Sbjct 501470 TTCCAATGTGATGGTCTTTCCTGTCAGGGTTTTGACGAAAATCTGCAT 501423 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || | || |||| ||||| ||| ||||||||||| || || || || Sbjct 503017 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAATCAGAA 502958 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || || || || || |||||||| |||| | ||| || || | || Sbjct 502957 AGTGTACGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGAGGT 502898 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| |||| |||| ||| | | ||||| || ||| || Sbjct 502897 ATTCCTTCCTTGTCC-TGAATTTTGGCTTTAACATTCTCGATCGTGTCCGACGCCTCAAC 502839 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||| || || || || |||| ||||| |||||||| ||||| Sbjct 502838 TTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACGAAAATTTGCAT 502791 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| |||||||| ||||||||||| | || || | || || Sbjct 503227 ACAAGATGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCTTCT 503168 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| | ||||| || | |||| || || ||| | || Sbjct 503167 AGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGC-CTTCTTTATCTTG 503109 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || | || | | ||||| | ||| ||||||| ||| || ||||| Sbjct 503108 AATTTTCGCCTTTACATTTTCGATCGTGTCTGAAGCCTCGACCTCCAGCGTAATAGTTTT 503049 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| || || || || || ||||||||||| Sbjct 503048 ACCAGTGAGAGTTTTGACAAAAATCTGCAT 503019 >seq5634 Length=4821945 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| || || ||||| || || || ||| Sbjct 1939161 CCTCCTCGAAGACGAAGAACCAAGTGAAGTGTGGATTCTTTTTGAATATTGTAATCAGAG 1939220 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || |||||||| || || ||||| ||||| || |||| |||| Sbjct 1939221 AGAGTTCTGCCATCTTCAAGTTGCTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 1939280 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | ||| || || ||| |||| || | ||| || | |||| | || || Sbjct 1939281 ATTCCCTCTTTATCT-TGAATTTTGGCCTTTACGTTTTCAATGGTGTCCGAAGCTTCGAC 1939339 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | || || ||||||||||| || |||||||| || ||||||||| Sbjct 1939340 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATG 1939388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462270274923200