Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4212 102 1e-16 seq3783 86.0 7e-12 seq3537 86.0 7e-12 >seq4212 Length=4365329 Score = 102 bits (112), Expect = 1e-16 Identities = 189/275 (69%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 |||| | || ||||| || || | |||| | |||||||||| || || ||||| | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 54456 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCAT 54514 | ||||| || ||| || || || ||| || || || || || ||| || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442 Query 54515 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 54574 | |||||| || | || || | ||| ||||| || ||||| || || || ||||| | Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382 Query 54575 TTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 54634 || ||||| |||| ||| | | || | ||||||||||||| ||| || || ||| Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322 Query 54635 TCTCGTTCGTAAATAATAACTGAGTTGAGTTTATC 54669 || || ||||| || ||| | || | ||||| || Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 |||| || || ||| |||||| | ||| | ||||| ||| || | ||||||||| Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | ||||||||| |||||||| | || || ||||| || ||||| ||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 53259 | ||| || ||||| || ||||| || || || || || || ||||||||||| Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 53389 ATATGTATCGTATG-GTCCTTCCTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 |||||| ||||| | | |||| |||| |||||| ||| ||||| || ||||| ||||| Sbjct 3415921 ATATGTTTCGTAAGTGCCCTT--TTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCA 3415864 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 ||||||| ||||||||||| || | || || |||| || || ||| || || ||| Sbjct 3415863 TAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCCTCTTTGCTTTCGAAGGGA 3415804 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 || | | | | ||||| ||||||| ||||| | || ||||| Sbjct 3415803 TATCTCATTAACAGGAACGCATCTGCTAGCCCTTGTATTCCTATACC 3415757 >seq3783 Length=2569584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 || |||| | || ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| |||||||| | | ||| ||||| |||| |||| ||| | || | Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| |||||||||||| Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011 >seq3537 Length=3457499 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| | |||||||| || || | || ||||||||||||| |||||| ||| || Sbjct 3063787 ACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGGA 3063728 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTCCA 24747 || ||||| |||||||| ||||| | ||||| || | || | |||||||| Sbjct 3063727 TACTGAATAGGAAAAATTACAAAACGGTTTGGGCCTTCTTGGAGCAGTGGTTCCA 3063673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||||||| || ||||| || ||||| | || || || || |||||||| |||| || Sbjct 3065246 TTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTCAGCCAAAAAATGGCTGC 3065187 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 ||| ||| ||||| || || || ||||||||||| || | | | ||| | | Sbjct 3065186 AAAACTGCCACTGAAGAAGATACCCTCGACTGCCGCAAATGCGACTACACGTTCAGGAAA 3065127 Query 24296 ACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||||| ||||| ||||| ||| ||||||| |||||||| |||||||| Sbjct 3065126 CGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAGCCTTCTTCCCCACACAAGG 3065067 Query 24353 CATTGTCTCTATAGCATTAAA 24373 | |||||| || |||||||| Sbjct 3065066 AAGTGTCTCAATCGCATTAAA 3065046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593687290313040