Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq3876 125 6e-24 >seq3876 Length=890137 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| ||||| |||||||||||||| ||||| | Sbjct 520606 CCACCGCGAAGCCTTAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAA 520665 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || || |||||||| || || | || | |||||||||||| || Sbjct 520666 AGGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGG 520725 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || ||| |||||| | | | || ||| | ||| | Sbjct 520726 ATTCCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACT 520785 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| ||||| || |||||||| || |||||||| Sbjct 520786 TCCAATGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||||||||| || ||||| ||||||||||| || | || || | |||| Sbjct 520393 AGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAAAGTGTGCGACCGTCT 520452 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||||||| || || | || | |||||||||||| ||| | ||||||||||| Sbjct 520453 TCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 520512 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-TTTCCACGGTAATGGT 21142 || ||| |||||| | | | || || | ||| || ||||| || || || Sbjct 520513 TGAATTTTTGCTTTCACGTTCTCAATCGTGTC-CGACGCTTCGACTTCCAGAGTGATTGT 520571 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| ||||| | |||||||||||| |||||||| Sbjct 520572 CTTACCGGTGAGCGTTTTGACAAAAATTTGCAT 520604 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||||| || ||||||||||| ||||| | || || || | || Sbjct 521076 GAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 521135 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || || | || | ||||||||| || || | ||||| ||||| Sbjct 521136 TTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTC 521195 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || ||| ||| || | ||| || ||| | ||| ||||| || ||||| Sbjct 521196 TTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGT 521255 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| || |||||||| || |||||||| Sbjct 521256 TTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| ||||| ||||| || ||||||||||| ||||| | || || || | || Sbjct 521304 GAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 521363 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || |||||||| || || |||| | ||||||||| || || | ||||| ||||| Sbjct 521364 TTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTC 521423 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 || ||| ||| || | ||| || ||| | ||| ||||| || ||||| Sbjct 521424 TTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGT 521483 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || | ||||||||||| || |||||| Sbjct 521484 TTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 521517 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | || | ||||| || || ||||| ||||||||||| || | Sbjct 520150 CCGCCGCGAAGCCTCAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 520209 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || |||||||| || ||| | || | |||||||| || || Sbjct 520210 AGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 520269 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | ||| || || | ||| | Sbjct 520270 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACT 520329 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| || ||||| || ||||| || ||||||||| Sbjct 520330 TCCAACGTGATGGTCTTTCCTGTTAATGTCTTGACGAAAATTTGCATT 520377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422235408729068