Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3876 141 8e-29 seq4552 122 8e-23 seq4069 116 3e-21 >seq3876 Length=890137 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || ||||||||||||||||| || Sbjct 521060 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAG 521119 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||| || ||||||||||| ||| |||| | | ||||||||| |||| Sbjct 521120 AAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAG 521179 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||||||| ||| || | ||||| ||||| | ||| |||| Sbjct 521180 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGC-CTCG 521238 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| ||||||| ||||| || ||||| ||||| Sbjct 521239 ACTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || ||||||||||||||||| || Sbjct 521288 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAG 521347 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||||| ||| || ||||||||||| ||| | || | | ||||||||| |||| Sbjct 521348 AAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAG 521407 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||||||| ||| || | ||||| ||||| | ||| |||| Sbjct 521408 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGC-CTCG 521466 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || ||||| ||||| ||||| |||||||| Sbjct 521467 ACTTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | ||||| ||||| || | ||||| || || |||||||| ||||| Sbjct 519920 TACCGCCGCGAAGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAG 519979 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || |||||||||||||| || |||| | | |||||||||||||| Sbjct 519980 AAAGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAG 520039 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||| || || ||| |||||| || || | ||||| ||||||| ||| | Sbjct 520040 GAATGCCTTCTTTATCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAA 520099 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || || ||||| || |||||||||||||| Sbjct 520100 CCTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||||||||| ||||| || || ||| | ||| || |||||| ||||| Sbjct 519717 GTGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTG 519776 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || | || ||||||||||| ||||| || || || |||||| Sbjct 519777 CTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCCTGAATTTT 519836 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 ||| || | ||||| ||||||| ||| ||||| | || | ||||| || || Sbjct 519837 CGCTTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTACCAGT 519896 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || |||||||||||||| Sbjct 519897 GAGAGTCTTGACAAAAATCTGCAT 519920 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || ||||| | ||||| |||| || || || || ||||| ||||||||| Sbjct 521518 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAT 521577 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || || ||||| ||||||||| |||| | ||||||||||||||| || Sbjct 521578 AAGGTACGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGG 521637 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||| ||| || ||| ||| || | |||| |||||| | ||| || || Sbjct 521638 ATACCTTCCTTATCTTGGATCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCT-TCAAC 521696 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || ||||||| || || || ||||||||||| Sbjct 521697 TTCAAGGGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 521744 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | || || ||||| || | ||| || || |||||||||||||| || Sbjct 520604 TACCACCGCGAAGCCTTAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG 520663 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || ||| || ||||||||||| ||| |||| | | |||||| || |||| Sbjct 520664 AAAGGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAG 520723 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || |||||||| ||||||| ||| || | || | ||||| | ||| ||| Sbjct 520724 GGATTCCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGC-CTCA 520782 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || ||||||| ||||| || ||||| ||||| Sbjct 520783 ACTTCCAATGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || || || ||||| ||||| || Sbjct 520832 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAG 520891 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || |||||||||||||| |||| | | |||||||| |||| Sbjct 520892 AAAGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAG 520951 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| ||||||| ||| || | ||||| ||||| | ||| ||| Sbjct 520952 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGC-CTCA 521010 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || ||||||| ||||| || ||||| ||||| Sbjct 521011 ACTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || ||||| | | ||||| || | || || || || |||||||| ||||| | Sbjct 520378 CCACCACGTAAACGAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATC--TG 520435 Query 118572 ATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| || || ||||||||||| ||| |||| | | |||||| || || | Sbjct 520436 AAAGTGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGG 520495 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || |||||||| ||||||| ||| || | || | ||||||| ||| ||| Sbjct 520496 GGATTCCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCAATCGTGTCCGACGCT-TCG 520554 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || ||||| || ||||| |||||||| ||||| Sbjct 520555 ACTTCCAGAGTGATTGTCTTACCGGTGAGCGTTTTGACAAAAATTTGCAT 520604 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | ||||| || || || | ||||| || || |||||||| ||||| Sbjct 520148 TACCGCCGCGAAGCCTCAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAG 520207 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || |||||||||||||| || |||| | | ||||||||| |||| Sbjct 520208 AAAGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAG 520267 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| |||||| ||| || | |||| ||||||| ||| | Sbjct 520268 GGATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAA 520327 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | || || || || | || || || ||||| ||||| Sbjct 520328 CTTCCAACGTGATGGTCTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 >seq4552 Length=86203 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||||||||| | || || || ||||||| |||||| |||||||| ||||||||||| Sbjct 4471 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGA 4412 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | || || || || || |||||| |||| | |||||| ||||| ||||| Sbjct 4411 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGG 4352 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGA 118689 || || || ||||| |||||| || || | ||| | ||||| | ||| |||| Sbjct 4351 GATTCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAGCT-TCGA 4293 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | ||||| || || |||||||| |||||||| ||||| Sbjct 4292 CTTCAAGAGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || ||||||||||| || ||||| Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || || ||||| ||||| | || |||||||||||||| || || Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| |||||| ||||| ||| || | ||| | ||||| | ||| ||||| Sbjct 3438 ATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCT-TCGAC 3380 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| ||| | ||||| || || ||||| || ||||| ||||||||| || Sbjct 3379 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATGCCT 3328 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | |||||| || || || |||||||||||| | || | |||||| | Sbjct 3311 CAAGATGAAGTGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCTA 3252 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || |||||||| |||| | ||| |||||||| ||||| || || || |||||| | Sbjct 3251 GTTGCTTTCCAGCAAAGATTAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGA 3192 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTG 118709 | || ||| || | || | ||||| | ||| || ||||| | ||| | ||||| Sbjct 3191 TCTTAGCTTTGACGTTCTCTATAGTGTCAGAAGCT-TCCACCTCAAGGGTGATGGTTTTC 3133 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||||||||| || |||||| Sbjct 3132 CCAGTGAGGGTTTTTACAAAGATTTGCATG 3103 >seq4069 Length=1127261 Score = 116 bits (128), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| || || |||||| || |||||| |||||| || ||||| || ||| ||| Sbjct 161737 CTTTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGA 161678 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| || || || ||||||||||| || || || || | | Sbjct 161677 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 161618 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | | ||| ||||||| ||| | ||||| || || || ||||| || | Sbjct 161617 CGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 161558 Query 118729 AAATCTGC---ATGGCTTAT 118745 | |||||| ||||||||| Sbjct 161557 AGATCTGCATGATGGCTTAT 161538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433805956775116