Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4552 143 2e-29 seq3876 107 2e-18 seq4212 87.8 2e-12 >seq4552 Length=86203 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| |||||| | || |||||| | || Sbjct 3560 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3619 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | || ||||| |||||| | || || |||||| Sbjct 3620 GACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 3679 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||||||||||||| || ||| | || |||||| Sbjct 3680 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAAC 3739 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||||||||| || Sbjct 3740 ATCCAGAAAGAATCTACTCTTCATCTGGTTCT 3771 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| ||||| | || |||||| | || Sbjct 3788 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTCT 3847 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || ||| | ||| ||||| |||||| | || || |||||| Sbjct 3848 GACACAATAGAAAACGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCAG 3907 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||| | || |||||||| ||||||||||||||| || ||| | || |||||| Sbjct 3908 CAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAAC 3967 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || |||||||| |||||||||||||| || Sbjct 3968 ATCCAGAAAGAATCTACTCTTCATCTGGTTCT 3999 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || |||||||| || || ||||| |||||| |||| || ||| | || Sbjct 3331 CATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 3390 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | |||| || ||| | ||| ||||| || || | || || || || Sbjct 3391 AGACACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAAGAGGGAATTCCCCCGGATCA 3450 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||||||||| | ||||| | ||| | |||||||| Sbjct 3451 GCAGCGTCTGATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTCTCTGATTATAA 3510 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || ||||||||||| || Sbjct 3511 TATTCAAAAAGAATCCACACTTCATCTGGTTCT 3543 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| ||||| ||||| ||||| | || || ||| | || Sbjct 4244 ATGCAAATTTTTGTGAAAACTCTCACAGGTAAAACCATCACTCTTGAAGTCGAAGCTTCA 4303 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| || || | ||| |||||| ||||| | || || || || Sbjct 4304 GACACTATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCAA 4363 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| |||| ||||||||||| || |||||||| | ||| | ||||| ||| Sbjct 4364 CAGCGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAAC 4423 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||||||||| || || || Sbjct 4424 ATCCAAAAAGAATCTACACTCCA 4446 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || ||| |||| || ||| | || Sbjct 4016 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 4075 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| |||||| || || | || || || || Sbjct 4076 GACACCATTGAAAACGTAAAGGCTAAAATCCAGGACAAAGAGGGAATTCCACCGGATCAA 4135 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| ||||||| | ||| | ||| || ||| Sbjct 4136 CAGCGTCTGATCTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAAC 4195 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| || ||||| |||| || Sbjct 4196 ATCCAAAAAGAATCCACACTTCACTTGGTTCT 4227 >seq3876 Length=890137 Score = 107 bits (118), Expect = 2e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || || || ||||| | || || ||| |||| Sbjct 520604 ATGCAAATTTTTGTCAAAACGCTCACCGGTAAGACAATCACTCTGGAAGTCGAAGCGTCG 520545 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| |||||||||||| | || || |||||| Sbjct 520544 GACACGATTGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCCCCGGACCAG 520485 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 ||| | | || ||||| || |||||| | |||||| || ||| | | ||||||| Sbjct 520484 CAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGACGGTCGCACACTTTCA--GATTATA 520427 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||| || ||||||||| | ||| |||| ||| Sbjct 520426 ACATTCAGAAGGAATCGACTTTGCATTTGGTTCTT 520392 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || || ||||| ||||| | || ||||| | || Sbjct 520148 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 520089 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || || ||| || || |||||| | || ||||| ||| Sbjct 520088 GACACGATCGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAG 520029 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || |||||| | |||||| || | ||||||||| Sbjct 520028 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAAC 519969 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| |||| | || || | ||||||| Sbjct 519968 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGGCTTCGCGGCGGTA 519920 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | ||||| || || ||||| | || ||||| |||| Sbjct 520376 ATGCAAATTTTCGTCAAGACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCG 520317 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || || ||| Sbjct 520316 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCAG 520257 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || |||||| | |||||| || | ||||||||| Sbjct 520256 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAAC 520197 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || || ||| | || | || || | ||||||| Sbjct 520196 ATTCAGAAGGAATCTACCCTGCATTTAGTTTTGAGGCTTCGCGGCGGTA 520148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || ||||| ||||| | || || || | || Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521229 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | ||| ||||| ||||| | || || || ||| Sbjct 521228 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521169 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || |||||| | ||||| ||| | || || ||| Sbjct 521168 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521109 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || ||| |||| || Sbjct 521108 ATTCAAAAAGAATCCACACTGCATTTGGTTCT 521077 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||||||| ||||| ||||| | || || || | || Sbjct 521516 ATGCAGATCTTTGTCAAAACCCTGACAGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521457 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| |||||| | ||| ||||| ||||| | || || || ||| Sbjct 521456 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || |||||| | ||||| ||| | || || ||| Sbjct 521396 CAGAGATTGATTTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521337 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || || ||| |||| || Sbjct 521336 ATTCAAAAAGAATCCACACTGCATTTGGTTCT 521305 >seq4212 Length=4365329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 || || ||||| |||| | |||| ||| || || || ||| | |||||||| Sbjct 3414504 GCATGTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCA 3414445 Query 23828 TCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACG 23887 | | | || ||||| || || || | ||||| ||| | |||||| |||||||| | Sbjct 3414444 TTTTCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTA 3414385 Query 23888 CCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTA 23947 ||||| ||||| | ||| || | | | ||||||||| |||| ||| | ||| || Sbjct 3414384 CCGTTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTG 3414325 Query 23948 AAGTCACGATCGTGCACTATGGCCGAATTCA 23978 ||||||||||||| | ||| || |||| || Sbjct 3414324 AAGTCACGATCGTATATTATAGCAGAATCCA 3414294 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 23005 AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGAC-- 23062 ||| ||| ||||||| ||||| || || | ||||||||| || || || | |||| Sbjct 3415540 AACGAACATGTTGACAGCGATAGATGCTAAATTGCATACAGCGACTTCTCCA--GGACCA 3415483 Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC-TG 23121 | ||| || | ||||||||| || | ||||| || || || ||||| | || ||| || Sbjct 3415482 GAGTATTCAATAATTTCGGTGCACAAGTTGCTGCATTTGATAGTGCCTATAT-GCTGATG 3415424 Query 23122 GTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTG 23181 || |||||||||||| ||| ||||| ||||| || || || || || || || || Sbjct 3415423 ATTTGATTTTCGATTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTACTTG 3415364 Query 23182 CGAC 23185 ||| Sbjct 3415363 GGAC 3415360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445740640274160