Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3783 95.1 2e-14 seq4212 93.3 5e-14 >seq3783 Length=2569584 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 || |||| | || ||||| |||||||||||||| ||||| || ||||| || |||| Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| |||||||| | | ||| ||||| |||| ||||| ||| | || | Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| |||||||||||| Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011 >seq4212 Length=4365329 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/265 (68%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 |||| | || ||||| || || | |||| | |||||||||| || || ||||| | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 63694 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63752 | ||||| || ||| || || || ||| || || || || || ||| || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 | |||||| || | || || | ||| ||||| || ||||| || || || || || | Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 || ||||| | || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322 Query 63873 TCTCGTTCGTAAATAATAACCGAAT 63897 || || ||||| || ||| | |||| Sbjct 3414321 TCACGATCGTATATTATAGCAGAAT 3414297 Score = 82.4 bits (90), Expect = 1e-10 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 |||| || || ||| |||||| | ||| | ||||| ||| || | |||||| || Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | |||||||| |||||||| | || || ||||| || ||||| ||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62497 | || || ||||| || ||||| || || || || || || ||||||||||| Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629781204415440