Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 138 1e-27
seq3783 107 2e-18
seq3537 105 6e-18
>seq4212
Length=4365329
Score = 138 bits (152), Expect = 1e-27
Identities = 180/247 (73%), Gaps = 4/247 (2%)
Strand=Plus/Minus
Query 37108 ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTT 37167
|||| |||| || || || ||||| |||| ||| ||||| || ||||| | ||
Sbjct 3416265 ATTAAATCTCGCAGTAAATGCGGATTGACAATGATAAATTCTCCCGACAATACACGCCTC 3416206
Query 37168 GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTA 37227
||| |||||||| |||||||||||||| || || ||||| | ||| || || | |||
Sbjct 3416205 ACATAGATATTGCTTGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTC 3416146
Query 37228 GATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTC 37287
|| || || ||||| |||||||||| |||| |||||| | ||| || | || ||
Sbjct 3416145 GAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTACTCCGTGCTTCGCGATCTTC 3416086
Query 37288 TTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATT 37345
|| | ||||| |||||||||||||| ||| || || | || ||||||||||||||
Sbjct 3416085 GCCTTCAATTCATCCCAATCCCATAAATTTGTCGGCTTAACGTT--CCACATATCATATT 3416028
Query 37346 GTAGAAT 37352
| || ||
Sbjct 3416027 GGAGGAT 3416021
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/225 (70%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471
||| | ||| ||||||| || || || |||||| | || || ||| |||||||||||
Sbjct 3414532 AGTACAGGCATTAAATAGAGTCGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 3414473
Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531
|||||||||||| || | || || ||| | |||||||| | || ||| ||||| |
Sbjct 3414472 ATATGTTTCTATGACTTTGTCAATGTCATTTTCATGAATACCAATAGCTACTCTCATCAA 3414413
Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591
||||||||| || || || | ||| ||| || ||| || || || | | || |
Sbjct 3414412 CATATGTTGAGGCCTCTCGACTATCTTACCGTTGATTTTTAGCAGGTAACTTCTCTCAAG 3414353
Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634
||||| | |||| |||| |||| ||| | || | |||||||
Sbjct 3414352 CGTTTTAAAACCAATATAATTATAATTGA--AGTCACGATCGTAT 3414310
>seq3783
Length=2569584
Score = 107 bits (118), Expect = 2e-18
Identities = 127/171 (74%), Gaps = 6/171 (4%)
Strand=Plus/Plus
Query 37375 TTATATGTCTCATAAGGTCCGTAAATTT---TAGCTAGTTCGCAACTAGATTCTAGTGCG 37431
||||||| ||||||||| || | ||| |||||| ||||||||||| |||||| |||
Sbjct 867104 TTATATGACTCATAAGGACCTT---TTTCAGTAGCTATTTCGCAACTAGCTTCTAGAGCG 867160
Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491
||||||| | || || |||||||| | || | | || ||||||| ||| || |||
Sbjct 867161 CCATAATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAAT 867220
Query 37492 GCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542
| || | || ||| ||||| |||| || || || || ||||| ||||||
Sbjct 867221 GGGTATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACCT 867271
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/201 (71%), Gaps = 4/201 (2%)
Strand=Plus/Plus
Query 38442 ATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACC 38501
|| ||| || ||| || ||||| | |||| |||||||| || || | ||| ||||| |
Sbjct 868480 ATATATAAAATATTGTTTCGACATAAAATTGTATGTTTCAATAACCTTATCAATATCTTC 868539
Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATT 38561
||||||||| ||| || || | ||||| ||| || ||||||||||| | | |||
Sbjct 868540 ACCGTGAATAGCTACAGCAACTCGCATTAACATGTGCTGTGGTCTTTCAACAACTTTTCC 868599
Query 38562 ATTCTGTTTAAGTAGATACGATTTTTCTAATG--TTTTTATTCCAAAATAACTATATGAA 38619
|||| |||| | ||| | ||| ||| | | |||| | | || ||||||||| |
Sbjct 868600 ATTCAGTTTCAATAGGT--GATCACTCTCAAGCATTTTAAATGTAACATAACTATAATTA 868657
Query 38620 TAATCTCTATCGTATGCTATT 38640
|||||||||| ||| ||||
Sbjct 868658 AAATCTCTATCATATAGTATT 868678
>seq3537
Length=3457499
Score = 105 bits (116), Expect = 6e-18
Identities = 135/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
||| || || || | ||| |||||| || |||||||||||||| || || ||||||||
Sbjct 3064183 ATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGAAA 3064124
Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018
||||||||||| ||||| || | | | || ||| | ||||| || | |||
Sbjct 3064123 GCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAGATT 3064064
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
||||| || ||||||||| || ||||| ||||||| | ||| |||||||||||
Sbjct 3064063 TTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTATTT 3064004
Query 12079 TTCGTC 12084
|||||
Sbjct 3064003 CTCGTC 3063998
Score = 98.7 bits (108), Expect = 9e-16
Identities = 166/239 (69%), Gaps = 10/239 (4%)
Strand=Plus/Minus
Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476
|| |||||||| || |||||| | ||||| | |||||||| || |||||||||
Sbjct 3065581 TTTTATACATT----ACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAAT 3065526
Query 11477 TCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACT 11536
|| || || | | |||| | |||||||| ||||| || || ||||| | ||
Sbjct 3065525 TCGATGTATTTACACATCCATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGC 3065466
Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596
|||||||| |||||||| || | || ||||| || | || || | | || || |
Sbjct 3065465 GTCAAAAATTCCTTTTCAATTTCTACGGCATCCATTACAATTGA---TTTCACACGCTCA 3065409
Query 11597 GATGGTGG---ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652
||| ||| |||| | ||||||||||||||||| || ||||| || ||||| ||
Sbjct 3065408 AATGATGGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCC 3065350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468497725123120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |