Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4212 138 1e-27 seq3783 107 2e-18 seq3537 105 6e-18 >seq4212 Length=4365329 Score = 138 bits (152), Expect = 1e-27 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 37108 ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTT 37167 |||| |||| || || || ||||| |||| ||| ||||| || ||||| | || Sbjct 3416265 ATTAAATCTCGCAGTAAATGCGGATTGACAATGATAAATTCTCCCGACAATACACGCCTC 3416206 Query 37168 GTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTA 37227 ||| |||||||| |||||||||||||| || || ||||| | ||| || || | ||| Sbjct 3416205 ACATAGATATTGCTTGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTC 3416146 Query 37228 GATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTC 37287 || || || ||||| |||||||||| |||| |||||| | ||| || | || || Sbjct 3416145 GAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTACTCCGTGCTTCGCGATCTTC 3416086 Query 37288 TTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATT 37345 || | ||||| |||||||||||||| ||| || || | || |||||||||||||| Sbjct 3416085 GCCTTCAATTCATCCCAATCCCATAAATTTGTCGGCTTAACGTT--CCACATATCATATT 3416028 Query 37346 GTAGAAT 37352 | || || Sbjct 3416027 GGAGGAT 3416021 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||| ||||||| || || || |||||| | || || ||| ||||||||||| Sbjct 3414532 AGTACAGGCATTAAATAGAGTCGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 3414473 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||||||| || | || || ||| | |||||||| | || ||| ||||| | Sbjct 3414472 ATATGTTTCTATGACTTTGTCAATGTCATTTTCATGAATACCAATAGCTACTCTCATCAA 3414413 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 ||||||||| || || || | ||| ||| || ||| || || || | | || | Sbjct 3414412 CATATGTTGAGGCCTCTCGACTATCTTACCGTTGATTTTTAGCAGGTAACTTCTCTCAAG 3414353 Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 ||||| | |||| |||| |||| ||| | || | ||||||| Sbjct 3414352 CGTTTTAAAACCAATATAATTATAATTGA--AGTCACGATCGTAT 3414310 >seq3783 Length=2569584 Score = 107 bits (118), Expect = 2e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 37375 TTATATGTCTCATAAGGTCCGTAAATTT---TAGCTAGTTCGCAACTAGATTCTAGTGCG 37431 ||||||| ||||||||| || | ||| |||||| ||||||||||| |||||| ||| Sbjct 867104 TTATATGACTCATAAGGACCTT---TTTCAGTAGCTATTTCGCAACTAGCTTCTAGAGCG 867160 Query 37432 GCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAAT 37491 ||||||| | || || |||||||| | || | | || ||||||| ||| || ||| Sbjct 867161 CCATAATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAAT 867220 Query 37492 GCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 | || | || ||| ||||| |||| || || || || ||||| |||||| Sbjct 867221 GGGTATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACCT 867271 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 38442 ATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACC 38501 || ||| || ||| || ||||| | |||| |||||||| || || | ||| ||||| | Sbjct 868480 ATATATAAAATATTGTTTCGACATAAAATTGTATGTTTCAATAACCTTATCAATATCTTC 868539 Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATT 38561 ||||||||| ||| || || | ||||| ||| || ||||||||||| | | ||| Sbjct 868540 ACCGTGAATAGCTACAGCAACTCGCATTAACATGTGCTGTGGTCTTTCAACAACTTTTCC 868599 Query 38562 ATTCTGTTTAAGTAGATACGATTTTTCTAATG--TTTTTATTCCAAAATAACTATATGAA 38619 |||| |||| | ||| | ||| ||| | | |||| | | || ||||||||| | Sbjct 868600 ATTCAGTTTCAATAGGT--GATCACTCTCAAGCATTTTAAATGTAACATAACTATAATTA 868657 Query 38620 TAATCTCTATCGTATGCTATT 38640 |||||||||| ||| |||| Sbjct 868658 AAATCTCTATCATATAGTATT 868678 >seq3537 Length=3457499 Score = 105 bits (116), Expect = 6e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || || | ||| |||||| || |||||||||||||| || || |||||||| Sbjct 3064183 ATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGAAA 3064124 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| ||||| || | | | || ||| | ||||| || | ||| Sbjct 3064123 GCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAGATT 3064064 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 ||||| || ||||||||| || ||||| ||||||| | ||| ||||||||||| Sbjct 3064063 TTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTATTT 3064004 Query 12079 TTCGTC 12084 ||||| Sbjct 3064003 CTCGTC 3063998 Score = 98.7 bits (108), Expect = 9e-16 Identities = 166/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476 || |||||||| || |||||| | ||||| | |||||||| || ||||||||| Sbjct 3065581 TTTTATACATT----ACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAAT 3065526 Query 11477 TCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACT 11536 || || || | | |||| | |||||||| ||||| || || ||||| | || Sbjct 3065525 TCGATGTATTTACACATCCATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGC 3065466 Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596 |||||||| |||||||| || | || ||||| || | || || | | || || | Sbjct 3065465 GTCAAAAATTCCTTTTCAATTTCTACGGCATCCATTACAATTGA---TTTCACACGCTCA 3065409 Query 11597 GATGGTGG---ATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||| ||| |||| | ||||||||||||||||| || ||||| || ||||| || Sbjct 3065408 AATGATGGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCC 3065350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468497725123120