Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4212 96.9 5e-15
seq3783 91.5 2e-13
>seq4212
Length=4365329
Score = 96.9 bits (106), Expect = 5e-15
Identities = 188/275 (68%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
|||| | || ||||| || || | |||| | |||||||||| || || ||||| |
Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501
Query 66487 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545
| ||||| || ||| || || || ||| || || || || || ||| || || |
Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442
Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605
| |||||| || | || || | ||| ||||| || ||||| || || || ||||| |
Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382
Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665
|| ||||| | || ||| | | || | ||||||||||||| ||| || || |||
Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322
Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700
|| || ||||| || ||| | || | ||||| ||
Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287
Score = 96.9 bits (106), Expect = 5e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177
|||| || || ||| |||||| | ||| | ||||| ||| || | |||||||||
Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239
Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237
|| | ||||||||| |||||||| | || || ||||| || ||||| |||||
Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179
Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290
| ||| || ||||| || ||||| || || || || || || |||||||||||
Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126
Score = 84.2 bits (92), Expect = 3e-11
Identities = 121/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Minus
Query 65420 ATATGTATCGTATG-GTCCTTCCTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477
|||||| ||||| | | |||| |||| |||||| ||| ||||| || ||||| |||||
Sbjct 3415921 ATATGTTTCGTAAGTGCCCTT--TTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCA 3415864
Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537
||||||| ||||||||||| || | || || |||| || || ||| || || |||
Sbjct 3415863 TAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCCTCTTTGCTTTCGAAGGGA 3415804
Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584
|| | | | | ||||| ||||||| ||||| | || |||||
Sbjct 3415803 TATCTCATTAACAGGAACGCATCTGCTAGCCCTTGTATTCCTATACC 3415757
>seq3783
Length=2569584
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|| |||| | || ||||| || ||||||||||| |||| || |||||||| ||||
Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| |||||||| |||||||| | | ||| ||||| |||| ||||| ||| | || |
Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991
Query 66919 ATTCTACCGTTGTTACTCCA 66938
|||| ||||||||||||
Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658134765839320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |