Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4212 96.9 5e-15 seq3783 91.5 2e-13 >seq4212 Length=4365329 Score = 96.9 bits (106), Expect = 5e-15 Identities = 188/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486 |||| | || ||||| || || | |||| | |||||||||| || || ||||| | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 66487 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 66545 | ||||| || ||| || || || ||| || || || || || ||| || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442 Query 66546 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 66605 | |||||| || | || || | ||| ||||| || ||||| || || || ||||| | Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382 Query 66606 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 66665 || ||||| | || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322 Query 66666 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 66700 || || ||||| || ||| | || | ||||| || Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 Score = 96.9 bits (106), Expect = 5e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 |||| || || ||| |||||| | ||| | ||||| ||| || | ||||||||| Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | ||||||||| |||||||| | || || ||||| || ||||| ||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 65290 | ||| || ||||| || ||||| || || || || || || ||||||||||| Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 65420 ATATGTATCGTATG-GTCCTTCCTTCT-CAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477 |||||| ||||| | | |||| |||| |||||| ||| ||||| || ||||| ||||| Sbjct 3415921 ATATGTTTCGTAAGTGCCCTT--TTCTGCAGCTAATTCGCAACTAGCTTCTAAGGCACCA 3415864 Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537 ||||||| ||||||||||| || | || || |||| || || ||| || || ||| Sbjct 3415863 TAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCTTTCGCCTCTTTGCTTTCGAAGGGA 3415804 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 || | | | | ||||| ||||||| ||||| | || ||||| Sbjct 3415803 TATCTCATTAACAGGAACGCATCTGCTAGCCCTTGTATTCCTATACC 3415757 >seq3783 Length=2569584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 || |||| | || ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| |||||||| | | ||| ||||| |||| ||||| ||| | || | Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991 Query 66919 ATTCTACCGTTGTTACTCCA 66938 |||| |||||||||||| Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658134765839320