Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4552 143 3e-29 seq3876 127 2e-24 >seq4552 Length=86203 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | |||| ||||| ||||| || |||||||| || Sbjct 3786 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3727 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | |||||||||||| |||||| ||||||||| || ||||| Sbjct 3726 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3667 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||||| | ||| | |||||| | || || || Sbjct 3666 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3607 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | || || ||||| | ||||| ||||| |||||||| Sbjct 3606 TCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | |||| ||||| ||||| || |||||||| || Sbjct 4014 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3955 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | |||||||||||| |||||| ||||||||| || ||||| Sbjct 3954 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3895 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| ||||| | ||| | |||||| | || || || Sbjct 3894 ATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3835 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || ||||| | ||||| ||||| |||||||| Sbjct 3834 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| | |||| ||||| || || || ||||| |||||| Sbjct 3331 GCCTCCACGAAGACGCAGAACAAGATGAAGTGTAGATTCCTTCTGGATGTTGTAATCGGA 3272 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || || || || || || |||||| |||| | |||||||||||| ||||| Sbjct 3271 AAGGGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATTAAACGTTGCTGATCTGGAGG 3212 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| || ||| | | || | ||||| | | ||||| Sbjct 3211 AATACCTTCTTTGTCTTGGATCTTAGCTTTGACGTTCTCTATAGTGTCAGAAGCTTCCAC 3152 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || || || || | |||||||| || |||||||| Sbjct 3151 CTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTTACAAAGATTTGCAT 3104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | |||| || || ||||||||||| |||||||| Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || ||||| |||||| | |||||||| |||||||| || || Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| ||| | | ||| | ||||| | | || || Sbjct 3438 ATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGACT 3379 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | || || || || || ||||| Sbjct 3378 TCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||||||||| | ||||| |||||||| ||||| ||||| | || || | Sbjct 4458 CGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 4399 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || || ||||| |||| | ||| || ||||| ||||| || ||||||||| Sbjct 4398 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTCTTTG 4339 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | || | | ||| | ||||| | | || || |||| || | Sbjct 4338 TC-CTGAATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAGAGTGAT 4280 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | ||||| || || |||||||| Sbjct 4279 GGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 >seq3876 Length=890137 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || || || ||||| || || || Sbjct 520834 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGAA 520893 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||| |||||||| |||||| |||||| | ||||||||| ||||| Sbjct 520894 AGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGG 520953 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 520954 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAAC 521012 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | ||||| |||||||| ||||| ||||| ||||||||| Sbjct 521013 TTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 521061 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || |||||||||||||| || || Sbjct 521062 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521121 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| || || |||||| | |||||||| ||||| Sbjct 521122 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGG 521181 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 521182 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGAC 521240 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || |||||||| ||||| ||||| ||||||||| Sbjct 521241 TTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 521289 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | ||||||||| || | ||||| || || |||||||||||||| Sbjct 520150 CCGCCGCGAAGCCTCAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 520209 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||||||| || ||| |||||| | |||||||| ||||| Sbjct 520210 AGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 520269 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| |||| | ||| | | || | ||||| | | ||| || Sbjct 520270 ATTCCTTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAAC 520328 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || || || || ||||| |||||||| Sbjct 520329 TTCCAACGTGATGGTCTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || || || |||||||||||||| Sbjct 520378 CCACCACGTAAACGAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAA 520437 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| |||||| |||||||| || || |||||| | ||||| || || || Sbjct 520438 AGTGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGG 520497 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCA 139715 || ||||| ||||| ||| |||||| ||| | |||| || | ||||| | | || | Sbjct 520498 ATTCCTTCCTTGTC-CTGAATTTTTGCTTTCAC-GTTCTCAATCGTGTCCGACGCTTCGA 520555 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || | || | ||||| ||||| | |||||| || || ||||||||| Sbjct 520556 CTTCCAGAGTGATTGTCTTACCGGTGAGCGTTTTGACAAAAATTTGCATA 520605 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | |||||| || || | ||||| || || |||||||||||||| Sbjct 519922 CCGCCGCGAAGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 519981 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||||||| || ||| |||||| | |||||||||||||| Sbjct 519982 AGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGA 520041 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||||||||| || ||| |||| | || | | ||| | ||||| | | ||| || Sbjct 520042 ATGCCTTCTTTATC-TTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAAC 520100 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | || || || || | || || || || || |||||| Sbjct 520101 CTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCATA 520149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || ||||| || |||||| | || | |||||| ||||| || ||| Sbjct 521548 GTGGATTCCTTCTGAATATTGTAATCGGATAAGGTACGTCCGTCTTCAAGCTGCTTTCCA 521607 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||| ||| ||||||||||| || || ||||| || || ||| ||| |||| Sbjct 521608 GCGAAGATCAAACGCTGCTGATCGGGTGGGATACCTTCCTTATCTTGGATCTTTGCTTTT 521667 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || || |||| ||| | ||||| |||||||| || Sbjct 521668 ACATTCTCGATGGTGTCAGAAGCTTCAACTTCAAGGGTTATGGTCTTCCCGGTCAATGTC 521727 Query 139748 TTTACGAATATTTGCATAG 139766 || ||||| || ||||||| Sbjct 521728 TTCACGAAAATCTGCATAG 521746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 139553 AAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCT 139612 ||||| || || | || || || ||||||||||| || || | || | ||| Sbjct 520621 AAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCCATCT 520680 Query 139613 TCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 139672 || |||||||| || || |||||| | ||||| || ||||| || ||||| ||||| Sbjct 520681 TCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC- 520739 Query 139673 GTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 ||| |||||| ||| | |||| || | ||||| | | ||| || || | || | | Sbjct 520740 CTGAATTTTTGCTTTCAC-GTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGATGG 520798 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| |||||||| ||||| ||||| ||||||||| Sbjct 520799 TCTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 520833 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | ||| || || | || || |||||||||||||| || || Sbjct 521290 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521349 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||||||| || || | |||| | |||||||| ||||| Sbjct 521350 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGG 521409 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| ||| | | ||| | ||||| | | ||| || Sbjct 521410 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGAC 521468 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || |||| ||||| || || || ||||| Sbjct 521469 TTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 89.7 bits (98), Expect = 5e-13 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 139531 GACATGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATA 139590 ||||| ||||||| | || | || | ||||| ||||||||||| ||||| ||||| Sbjct 519687 GACATCTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGACTCTTTCTGAATATTATA 519746 Query 139591 ATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGAT 139649 ||| | || | || | || || ||||| || || || | ||||| | ||| |||| Sbjct 519747 GTCGGATAAAGTCCGTCCA-TCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGAT 519805 Query 139650 CGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTG 139708 ||||||| ||||||||||| || ||| |||| | ||| | | ||| | ||||| | Sbjct 519806 CGGGAGGAATGCCTTCTTTATC-CTGAATTTTCGCTTTCACGTTTTCGATCGTGTCCGAA 519864 Query 139709 GGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | ||| ||||| | || | || || || || | || || || || || |||||| Sbjct 519865 GCCTCAACCTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCATA 519921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496035333701600