Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4212 114 2e-20 seq3783 100 4e-16 >seq4212 Length=4365329 Score = 114 bits (126), Expect = 2e-20 Identities = 192/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 |||| || || ||| |||||| | ||| | ||||| ||| || | ||||||||| Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||||||| |||||||| | || || ||||| || ||||||||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | ||||| ||||| || ||||| || || || || ||||||||||||||||| | || Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGCTATTAAA 3416119 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | |||||| | |||| ||| || | || | ||||||||||| | | Sbjct 3416118 AGGGAATTTCTTACTCCGTGCTTCGCGATCTTCGCCTTCAATTCATCCCAATCCCATAAA 3416059 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | | ||| ||| ||||| | ||||||||| || || Sbjct 3416058 TTTGTCGGCTTAACGTTCCACATATCATATTGGAGGAT 3416021 Score = 93.3 bits (102), Expect = 6e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 80306 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 |||| | || ||||| || || | |||| | |||||||||| || || ||||| | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATT 80425 | ||||| || ||| |||| ||| || || || || || || || || || Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTT 3414441 Query 80426 GATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTAT 80485 |||||| || | || || | ||| ||||| || ||||| || || || ||||| | Sbjct 3414440 CATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCGT 3414381 Query 80486 TTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 80545 | ||||| | || |||| | | || | ||||||||||||| ||| || || |||| Sbjct 3414380 TGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGT 3414321 Query 80546 CTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 80579 | || ||||| || ||| | || | ||||| || Sbjct 3414320 CACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 >seq3783 Length=2569584 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 || |||| | || ||||| |||||||||||||| |||| || ||||| || ||||| Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| | | ||| ||||| |||| ||||| ||| | || | Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| |||||||||||| Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 |||| |||||||| |||| ||| | |||| ||| ||||| || |||| || || | Sbjct 867107 TATGACTCATAAGGACCTT--TTTCAGTAGCTATTTCGCAACTAGCTTCTAGAGCGCCAT 867164 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 |||| | || || ||||| | ||||| || | |||||| ||| |||||||| | Sbjct 867165 AATAGAGAGTCTCAAAAATTTGAACGTTGAGTTCATTAGCTTCTTTGCTTTCAAATGGGT 867224 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | | | |||||| || |||||||||||||| ||||||||||| Sbjct 867225 ATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718227293041720