Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3537 95.1 1e-14 seq3798 84.2 2e-11 >seq3537 Length=3457499 Score = 95.1 bits (104), Expect = 1e-14 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 14111 AAATAAATA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 ||||| || || ||| ||||| | | ||||| || || ||||| || || ||||| Sbjct 3064217 AAATATATTCTTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACA 3064158 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||||| || || ||||| || || || ||||| ||||| || || | ||||| | Sbjct 3064157 TCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGGAA 3064098 Query 14230 ATTGTACTTCC-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 || || ||| || | || ||| || || |||||||||||| ||||||||| ||| Sbjct 3064097 TTTTCACCTCCTGACTGAA-TCTCTCAATCAGATTTTCATTAACGATACCATCAGAAGCG 3064039 Query 14289 GCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC 14329 ||||| ||||| || | | |||||||||| ||| || Sbjct 3064038 GCAAAGAATGCTAAGACATGAGAGATAAAGTATTTCTCGTC 3063998 >seq3798 Length=619326 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 139654 AATATAGCTTACACAAGAGTAAACCATACAAAATACATGGTTACTGATAAAGTTGCATAT 139713 || ||| | ||| | ||||||||||| | ||||||||||| |||||| || |||||| Sbjct 199086 AAAATACCGTACGCGAGAGTAAACCACAATAAATACATGGTCACTGATGTAGCAGCATAT 199027 Query 139714 GTGGGCACGTCAAATTGGTTAGGTAATTATTTTACTGATAC 139754 || || ||| ||||||| ||| ||||||||| |||||| Sbjct 199026 GTCGGAACGAGTAATTGGTCGGGTGATTATTTTATTGATAC 198986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479700277718200