Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3537 104 2e-17 seq3798 93.3 4e-14 >seq3537 Length=3457499 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || ||| ||||| | | ||||| || || ||||| || || |||||| ||||| || Sbjct 3064207 TTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATG 3064148 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 || |||||||| || || ||||| ||||| ||||| | ||||| | || ||||| Sbjct 3064147 AATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTC 3064088 Query 14028 C-GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | || | || ||| || || ||||||||||| ||||||||| ||| ||||| |||| Sbjct 3064087 CTGACTGAA-TCTCTCAATCAGATTTTCATTAACGATACCATCAGAAGCGGCAAAGAATG 3064029 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTC 14117 | || | | |||||||||| ||| || Sbjct 3064028 CTAAGACATGAGAGATAAAGTATTTCTCGTC 3063998 >seq3798 Length=619326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 139324 AATATACCGTACACTAGAGTAAACCATACAAAATACATGGTTACTGATAAAGTTGCATAT 139383 || ||||||||| | ||||||||||| | ||||||||||| |||||| || |||||| Sbjct 199086 AAAATACCGTACGCGAGAGTAAACCACAATAAATACATGGTCACTGATGTAGCAGCATAT 199027 Query 139384 GTGGGTACGTCAAATTGGTTAGGTAATTATTTTAATGATAC 139424 || || ||| ||||||| ||| ||||||||| |||||| Sbjct 199026 GTCGGAACGAGTAATTGGTCGGGTGATTATTTTATTGATAC 198986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478561143549720