Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq4552 93.3 3e-14
seq3876 89.7 3e-13
>seq4552
Length=86203
Score = 93.3 bits (102), Expect = 3e-14
Identities = 155/222 (70%), Gaps = 14/222 (6%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-- 33212
|| || || || || | ||| || |||||||| || ||||||||||| | |||||
Sbjct 4458 CGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAA----GAGTTCT 4403
Query 33213 --GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
||| |||| |||||| ||| || |||||||| || || || | || || |||||
Sbjct 4402 GCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTC 4343
Query 33271 TTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327
||| || || | ||| || || ||| ||| ||||| | || || || ||
Sbjct 4342 TTTGTCCTGAATTTTGGCC---TTCACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAG 4286
Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| || ||||| || || |||||||| || |||||||||||
Sbjct 4285 AGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244
Score = 89.7 bits (98), Expect = 3e-13
Identities = 116/159 (73%), Gaps = 6/159 (4%)
Strand=Plus/Minus
Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273
||| ||||| || || ||| || || |||||||||||||| | || |||||||||||
Sbjct 3943 GTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTT 3884
Query 33274 ---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330
|| | | | || |||||| ||| || ||||| || || ||| || |||||
Sbjct 3883 GTCTTGGATTTTAGC---TTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGT 3827
Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || |||||||| ||||| ||||||||
Sbjct 3826 GATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788
Score = 87.8 bits (96), Expect = 1e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273
||| ||||| || || ||| || || |||||||||||||| | || |||||||||||
Sbjct 3715 GTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTT 3656
Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|| ||| |||||| ||| || ||||| || || ||| || || || ||
Sbjct 3655 GTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGAT 3596
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || || |||||||| ||||| ||||||||
Sbjct 3595 GGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560
Score = 86.0 bits (94), Expect = 4e-12
Identities = 156/223 (70%), Gaps = 14/223 (6%)
Strand=Plus/Minus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213
|||| |||| ||| | ||| || |||||||| ||||| |||||||| | |||||
Sbjct 3546 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGA----GAGTTCT 3491
Query 33214 GTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270
| |||| ||| ||| || ||| ||| || | ||| ||||| |||| ||| || || ||
Sbjct 3490 GCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTC 3431
Query 33271 TTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327
||| || | | | || ||| || ||| ||| ||||| | || || || ||
Sbjct 3430 TTTGTCTTGGATTTTGGC---TTTCACATTTTCAATAGTGTCTGAAGCTTCGACTTCGAG 3374
Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370
|| || ||||| ||||||||||| || || || || ||||||
Sbjct 3373 GGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331
>seq3876
Length=890137
Score = 89.7 bits (98), Expect = 3e-13
Identities = 161/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | |||||||||| ||| || || || || |||||||| |||||
Sbjct 520833 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGA 520892
Query 33202 CAAATTGAGTTGGTCATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258
|| || | || |||| ||| || |||||| ||| || || | |||||| ||||
Sbjct 520893 --AAGTGTGC-GGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGG 520949
Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318
|| || |||||||| || ||| ||| || ||| |||||||| | |
Sbjct 520950 AGGGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTC 521009
Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||| |||| || || || ||||| || | ||||| ||||||||||||||
Sbjct 521010 AACTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201
||| || | ||| || | |||||||||| ||| || |||||||| || ||||| |||||
Sbjct 521061 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGA 521120
Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261
| | || | || || | || ||||| || || || | ||||| || | ||
Sbjct 521121 AAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGG 521180
Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAA 33320
|| |||||||| || ||| ||| || ||| |||||||| | || | ||
Sbjct 521181 GATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA- 521239
Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| |||| || || |||||||| || | ||||| ||||||||||||||
Sbjct 521240 CTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318759639173454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |