Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4552 93.3 3e-14 seq3876 89.7 3e-13 >seq4552 Length=86203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTT-- 33212 || || || || || | ||| || |||||||| || ||||||||||| | ||||| Sbjct 4458 CGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAA----GAGTTCT 4403 Query 33213 --GGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 ||| |||| |||||| ||| || |||||||| || || || | || || ||||| Sbjct 4402 GCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTC 4343 Query 33271 TTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 ||| || || | ||| || || ||| ||| ||||| | || || || || Sbjct 4342 TTTGTCCTGAATTTTGGCC---TTCACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAG 4286 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || || |||||||| || ||||||||||| Sbjct 4285 AGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 Score = 89.7 bits (98), Expect = 3e-13 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| ||||| || || ||| || || |||||||||||||| | || ||||||||||| Sbjct 3943 GTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTT 3884 Query 33274 ---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | | | || |||||| ||| || ||||| || || ||| || ||||| Sbjct 3883 GTCTTGGATTTTAGC---TTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGAGT 3827 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || |||||||| ||||| |||||||| Sbjct 3826 GATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 ||| ||||| || || ||| || || |||||||||||||| | || ||||||||||| Sbjct 3715 GTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGAATGCCTTCTTT 3656 Query 33274 TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 || ||| |||||| ||| || ||||| || || ||| || || || || Sbjct 3655 GTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGAT 3596 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| ||||| |||||||| Sbjct 3595 GGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 Score = 86.0 bits (94), Expect = 4e-12 Identities = 156/223 (70%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG- 33213 |||| |||| ||| | ||| || |||||||| ||||| |||||||| | ||||| Sbjct 3546 CGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGA----GAGTTCT 3491 Query 33214 GTCATC--CAA-TTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 | |||| ||| ||| || ||| ||| || | ||| ||||| |||| ||| || || || Sbjct 3490 GCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTC 3431 Query 33271 TTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAG 33327 ||| || | | | || ||| || ||| ||| ||||| | || || || || Sbjct 3430 TTTGTCTTGGATTTTGGC---TTTCACATTTTCAATAGTGTCTGAAGCTTCGACTTCGAG 3374 Query 33328 AGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| ||||||||||| || || || || |||||| Sbjct 3373 GGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331 >seq3876 Length=890137 Score = 89.7 bits (98), Expect = 3e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | |||||||||| ||| || || || || |||||||| ||||| Sbjct 520833 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGA 520892 Query 33202 CAAATTGAGTTGGTCATC--CAAT-TGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || || | || |||| ||| || |||||| ||| || || | |||||| |||| Sbjct 520893 --AAGTGTGC-GGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGG 520949 Query 33259 GGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || |||||||| || ||| ||| || ||| |||||||| | | Sbjct 520950 AGGGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTC 521009 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || || ||||| || | ||||| |||||||||||||| Sbjct 521010 AACTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || | ||| || | |||||||||| ||| || |||||||| || ||||| ||||| Sbjct 521061 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGA 521120 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || || | || ||||| || || || | ||||| || | || Sbjct 521121 AAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGG 521180 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAA 33320 || |||||||| || ||| ||| || ||| |||||||| | || | || Sbjct 521181 GATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA- 521239 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | |||| || || |||||||| || | ||||| |||||||||||||| Sbjct 521240 CTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318759639173454