Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4552 98.7 7e-16 seq3876 87.8 1e-12 >seq4552 Length=86203 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| ||| || ||| |||||||||||||||||||| | | | || |||| || Sbjct 3540 ACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAGAGAGTTCTGC-CATCTTC 3482 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || ||||| |||| || ||||| ||| | || | || ||||| ||| Sbjct 3481 AAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCTTG 3422 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| ||| || | ||| ||| |||| | || || |||| || || ||||| Sbjct 3421 GATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTTTT 3362 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||| || | |||||||||||| || |||||| Sbjct 3361 ACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331 >seq3876 Length=890137 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTC 43971 |||||||| || ||| ||||||||||| || || || | | || || |||| || Sbjct 521080 ACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTG-CGGCCATCTTC 521138 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||||| || || ||||| | ||||| || |||| | |||||||| ||| Sbjct 521139 AAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 521198 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| |||||| | | | || || | | ||| || || | ||| || ||||| Sbjct 521199 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTTTT 521258 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || || || || |||||||| Sbjct 521259 TCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| || || || || ||||| |||||||| | ||| | Sbjct 519934 CTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCG 519993 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||||| ||||| ||||||| ||||| || |||| | ||||||||| Sbjct 519994 TCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTA 520053 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| || || | | | || || | | ||| || || | || || Sbjct 520054 TCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATA 520113 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || | |||||| ||||| || ||||| Sbjct 520114 GTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354757610832204