Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3876 190 5e-43 seq4552 181 2e-40 seq3537 123 6e-23 >seq3876 Length=890137 Score = 190 bits (210), Expect = 5e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGA 104391 ||| ||||| || | |||||| || || | |||||| |||||||||||||||||||| || Sbjct 519693 TCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGACTCTTTCTGAATATTATAGTCGGA 519752 Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 || ||| | || || ||||| || || || || ||||| || || |||||||| ||||| Sbjct 519753 TAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGG 519812 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 || ||||||||||||||||| || ||||| || ||||| | || || || || || Sbjct 519813 AATGCCTTCTTTATCCTGAATTTTCGCTTTCACGTTTTCGATCGTGTCCGAAGCCTCAAC 519872 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 519873 CTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 519920 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| | || | ||| | |||||||| |||||||| ||||| ||||| || || | Sbjct 519931 AGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGG 519990 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| || |||||||| ||||| || | |||||| ||||| ||||| || |||||| Sbjct 519991 CCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCT 520050 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| ||||| || || || || ||||| | || || || || ||||| ||||| Sbjct 520051 TTATCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTG 520110 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| |||||||| || || || ||||| |||||||| Sbjct 520111 ATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| |||||||| ||||| || |||||||| ||||| | || ||| Sbjct 521305 AGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 521364 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || ||||| | ||||| ||||| ||||| ||||||||||| || Sbjct 521365 TCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 521424 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| |||||||| |||||||| | || || | || || || | || || || Sbjct 521425 TGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTT 521484 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || ||||| ||||| ||||||||| Sbjct 521485 TTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 521517 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| ||||| ||||||||||| |||||||| || || | || ||| Sbjct 520849 AGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCT 520908 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||||||||| || | || || ||||| ||||| ||||||||||| || Sbjct 520909 TCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGGATTCCTTCTTTGTCT 520968 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| |||||||| |||||||| | || || | || || || | || || ||| Sbjct 520969 TGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAACTTCCAACGTGATGGTC 521028 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | |||||| || || || ||||| Sbjct 521029 TTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || | ||| | || ||||| ||||||||||| || || |||| || | ||| Sbjct 521530 CTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGATAAGGTACGTCCG 521589 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| || || |||||||| || || | | ||| ||||| || || || ||||| ||| Sbjct 521590 TCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGGATACCTTCCTTA 521649 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||||||||||||||| || | ||| || || ||| || || || || || Sbjct 521650 TCTTGGATCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAACTTCAAGGGTTATG 521709 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || | ||| || || || |||||||| Sbjct 521710 GTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 521744 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| | ||| |||||||| ||||| || |||||||| ||||| | || ||| Sbjct 521077 AGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCT 521136 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || |||||||| || || || | ||||| ||||| ||||| ||||||||||| || Sbjct 521137 TCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 521196 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| |||||||| |||||||| | || || | || || || | || || || Sbjct 521197 TGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTT 521256 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | |||||| || || || ||||| Sbjct 521257 TTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 >seq4552 Length=86203 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | ||| |||||||| ||||||||||| ||| Sbjct 3561 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCA 3502 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || ||||| |||||||| ||||||||||| || | ||| ||||| || Sbjct 3501 GAGAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGG 3442 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| ||||| || || || || ||||| |||||||| | || || || ||| Sbjct 3441 GGAATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCG 3382 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || ||||| ||||| || || ||||| |||||||| Sbjct 3381 ACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||| || | |||||||||||| || || || || ||||| |||||||| |||||||| Sbjct 4452 ACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCC 4393 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || ||||| || |||| | ||||||||| ||||| ||||||||||| |||||| Sbjct 4392 AGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTCTTTGTCCTGA 4333 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || || || || || ||||| | || || || ||| || || || || || || ||| Sbjct 4332 ATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAGAGTGATGGTTTTA 4273 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || ||||| ||||| || |||||| Sbjct 4272 CCTGTGAGAGTTTTCACAAAAATTTGCATT 4243 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | ||||||||| ||||| || || || || || || ||||| || || Sbjct 3315 AGAACAAGATGAAGTGTAGATTCCTTCTGGATGTTGTAATCGGAAAGGGTTCTGCCATCC 3256 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 |||||||| ||||||||||| |||| | || ||||| ||||| || |||||||| || Sbjct 3255 TCTAGTTGCTTTCCAGCAAAGATTAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCT 3196 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| ||||| || || |||| || || || ||| ||||| || || || || Sbjct 3195 TGGATCTTAGCTTTGACGTTCTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTT 3136 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||||||||| || ||||| Sbjct 3135 TTCCCAGTGAGGGTTTTTACAAAGATTTGCAT 3104 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | |||||||||||||| || |||||||| Sbjct 3789 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCT 3730 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || ||||||||||| | ||||| ||||| || || | | || || |||||| Sbjct 3729 GAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 3670 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || ||||| |||||||| ||||||| || || | ||| Sbjct 3669 GGAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCA 3610 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || || ||||| || || || |||||| Sbjct 3609 ACTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3559 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || ||||| | |||||||||||||| || |||||||| Sbjct 4017 ATTCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCT 3958 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || ||||||||||| | ||||| ||||| || || | | || || |||||| Sbjct 3957 GAGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGA 3898 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| || || || || |||||||| ||||||| || || | ||| Sbjct 3897 GGAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCA 3838 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || || ||||| || || || |||||| Sbjct 3837 ACTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3787 >seq3537 Length=3457499 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 ||||| ||| || | | || || ||||| | | ||||||||||||||| |||||||| Sbjct 3064010 TTTATCTCTCATGTCTTAGCATTCTTTGCCGCTTCTGATGGTATCGTTAATGAAAATCTG 3064069 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 | |||| ||| |||| ||||| | ||||| ||||| | ||||| || || || || Sbjct 3064070 ATTGAGAGATTCAGTCAGGAGGTGAAAATTCCCGAAGCACGTTGTTTCTATGGCTTTCAA 3064129 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGAT 269020 || || ||||||||||||||||| |||||||| | | | || || |||||||| | Sbjct 3064130 ATTGCCATAGAAAATATTCATTCTGAGATGTATTCTTTGCTCATTGAAACTTATATTTCT 3064189 Query 269021 GATAACAACGAAAAGAAAAGACTATTTT 269048 ||| || |||||| |||| ||| || Sbjct 3064190 GATCCAAAAGAAAAG-TAAGAATATATT 3064216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151330200154084