Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4552 109 5e-19
seq4069 91.5 1e-13
seq3876 91.5 1e-13
>seq4552
Length=86203
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||||||||| | | ||| ||||| || ||||| || ||||| |||||||||||||
Sbjct 4471 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGA 4412
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| || |||| ||||| ||||| || || | ||||||||||| ||||| ||
Sbjct 4411 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGG 4352
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||| |||||| |||||| ||| | | || || || | || || ||
Sbjct 4351 GATTCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAG-CTTCGA 4293
Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || | || ||||||||||| |||||||||||||||||||| |||||
Sbjct 4292 CTTCAAGAGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||||||| || ||||| |||||||| || | | || | || |||
Sbjct 4224 ACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCC 4165
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|| || |||||| || | || | |||||| |||||| || | | || ||||||
Sbjct 4164 AGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGG 4105
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATGGTTTT 48696
||||| ||| | | ||||| || | || || || || ||| || ||||||||
Sbjct 4104 ATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAG-CTTCGACTTCGAGGGTAATGGTTTT 4046
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||||||||||||| || || |||||
Sbjct 4045 ACCGGTGAGAGTTTTCACGAAGATTTGCAT 4016
>seq4069
Length=1127261
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/197 (71%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 48539 TTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597
||||| || || ||||| | || | || || | |||||||| || || ||| || | ||
Sbjct 161735 TTTTGGATATTATAATCGGACAGAGTG-CGTCCATCCTCCAGTTGTTTGCCGGCGAAGAT 161677
Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657
| ||||| ||||| ||| | | ||||||||| || || ||||| | | |
Sbjct 161676 GAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTC 161617
Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717
|||||||||| | ||| ||||| || ||||||||||| ||||| |||||||| ||
Sbjct 161616 GATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAA 161557
Query 48718 AATCTGCATCGTGTCTT 48734
|||||||| || |||
Sbjct 161556 GATCTGCATGATGGCTT 161540
>seq3876
Length=890137
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | ||| || || ||||| || || ||||| |||||||| |||||||
Sbjct 519921 ACCGCCGCGAAGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGA 519980
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| || || |||| || ||||| || ||| | | || || | ||||||||| |
Sbjct 519981 -AAGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAG 520039
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||| || || ||||||| ||| | | || || || | || |||
Sbjct 520040 GAATGCCTTCTTTATCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAA 520099
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| || |||||||| |||||||| || ||||||||||||||
Sbjct 520100 CCTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148
Score = 89.7 bits (98), Expect = 4e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||| | |||||| || ||||| | |||| ||||||||||||||||| ||||
Sbjct 520605 ACCACCGCGAAGCCTTAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG- 520663
Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| || || | || || ||||| || ||| || | || || | |||||| ||| |
Sbjct 520664 AAAGGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAG 520723
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676
| | | |||||||||| |||||| ||| || | | | || || || | | |||
Sbjct 520724 GGATTCCTTCCTTGTCCTGAATTTT-TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCA 520782
Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | ||| ||||| || ||||| | ||||| || ||||| |||||
Sbjct 520783 ACTTCCAATGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || ||||| || | || ||||| || ||| ||||| ||||| |||||||| |
Sbjct 521518 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAT 521577
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| || |||| || |||||||| || || | || |||||||||||||| ||
Sbjct 521578 AAGGTACGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGG 521637
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| || |||||| || || || ||| || | | | | ||||| || | || ||
Sbjct 521638 ATACCTTCCTTATCTTGGATCTT-TGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAAC 521696
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|| | |||||||| || ||||| | || ||||| ||||||||||| |||
Sbjct 521697 TTCAAGGGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATAGTG 521748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421227465522623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |