Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4552 109 5e-19 seq4069 91.5 1e-13 seq3876 91.5 1e-13 >seq4552 Length=86203 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | ||| ||||| || ||||| || ||||| ||||||||||||| Sbjct 4471 ACCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGA 4412 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || |||| ||||| ||||| || || | ||||||||||| ||||| || Sbjct 4411 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGG 4352 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| |||||| |||||| ||| | | || || || | || || || Sbjct 4351 GATTCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAG-CTTCGA 4293 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || | || ||||||||||| |||||||||||||||||||| ||||| Sbjct 4292 CTTCAAGAGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||||||| || ||||| |||||||| || | | || | || ||| Sbjct 4224 ACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCC 4165 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 || || |||||| || | || | |||||| |||||| || | | || |||||| Sbjct 4164 AGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGG 4105 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCT-CGACTGTTATGGTTTT 48696 ||||| ||| | | ||||| || | || || || || ||| || |||||||| Sbjct 4104 ATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAG-CTTCGACTTCGAGGGTAATGGTTTT 4046 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||||||||||||| || || ||||| Sbjct 4045 ACCGGTGAGAGTTTTCACGAAGATTTGCAT 4016 >seq4069 Length=1127261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 48539 TTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAAT 48597 ||||| || || ||||| | || | || || | |||||||| || || ||| || | || Sbjct 161735 TTTTGGATATTATAATCGGACAGAGTG-CGTCCATCCTCCAGTTGTTTGCCGGCGAAGAT 161677 Query 48598 TAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGC 48657 | ||||| ||||| ||| | | ||||||||| || || ||||| | | | Sbjct 161676 GAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTC 161617 Query 48658 TATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAA 48717 |||||||||| | ||| ||||| || ||||||||||| ||||| |||||||| || Sbjct 161616 GATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAA 161557 Query 48718 AATCTGCATCGTGTCTT 48734 |||||||| || ||| Sbjct 161556 GATCTGCATGATGGCTT 161540 >seq3876 Length=890137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| || || ||||| || || ||||| |||||||| ||||||| Sbjct 519921 ACCGCCGCGAAGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGA 519980 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || |||| || ||||| || ||| | | || || | ||||||||| | Sbjct 519981 -AAGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAG 520039 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||| || || ||||||| ||| | | || || || | || ||| Sbjct 520040 GAATGCCTTCTTTATCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAA 520099 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||| || |||||||| |||||||| || |||||||||||||| Sbjct 520100 CCTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | |||||| || ||||| | |||| ||||||||||||||||| |||| Sbjct 520605 ACCACCGCGAAGCCTTAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAG- 520663 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || || || | || || ||||| || ||| || | || || | |||||| ||| | Sbjct 520664 AAAGGGTACGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAG 520723 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCC 48676 | | | |||||||||| |||||| ||| || | | | || || || | | ||| Sbjct 520724 GGATTCCTTCCTTGTCCTGAATTTT-TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCA 520782 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| || ||||| | ||||| || ||||| ||||| Sbjct 520783 ACTTCCAATGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| || | || ||||| || ||| ||||| ||||| |||||||| | Sbjct 521518 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAT 521577 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || |||| || |||||||| || || | || |||||||||||||| || Sbjct 521578 AAGGTACGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGG 521637 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||| || || || ||| || | | | | ||||| || | || || Sbjct 521638 ATACCTTCCTTATCTTGGATCTT-TGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAAC 521696 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | |||||||| || ||||| | || ||||| ||||||||||| ||| Sbjct 521697 TTCAAGGGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATAGTG 521748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421227465522623