Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3764 212 1e-50 seq3918 156 7e-34 seq2867 152 8e-33 >seq3764 Length=3140254 Score = 212 bits (234), Expect = 1e-50 Identities = 207/267 (78%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || |||||||||||||||||| Sbjct 2290497 GCAAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACCAAGCCAGCTATC 2290438 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| || |||||||| ||||||||| | || || ||| |||| ||||| | | Sbjct 2290437 CGTCGTTTGGCACGACGTGGTGGTGTCAAGCGTATATCCGGCTTGATCTACGAAGAAACT 2290378 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| |||||| ||||||| ||| |||||| | |||||| | ||| ||||| Sbjct 2290377 CGAGGTGTGTTGAAGGTCTTCCTTGAGAACGTTATTCGCGATGCTGTAACCTACACCGAA 2290318 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | |||||||| ||| ||||||| |||| || || | |||||||||||| Sbjct 2290317 CACGCGAAAAGGAAGACTGTAACCGCCATGGACGTCGTATACGCCCTCAAACGTCAAGGC 2290258 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 2290257 AGAACTCTGTACGGCTTTGGTGGTTAA 2290231 >seq3918 Length=5396348 Score = 156 bits (172), Expect = 7e-34 Identities = 178/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | ||||| ||||||||||| || || ||||| || || ||| Sbjct 5256344 GCGAAGAGACATCGTAAAGTACTTCGTGATAACATCCAGGGTATTACCAAACCGGCCATC 5256403 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| |||||||| |||||||| ||| | || |||||| | || || || | Sbjct 5256404 CGTCGTTTGGCACGTCGTGGCGGAGTCAAACGTATTTCCGGATTGATTTACGAGGAAACA 5256463 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | || | | | |||||| | ||| || | |||||||||| Sbjct 5256464 CGTGGTGTACTGAAGGTGTTTTTAGAAAACGTTATTCGTGACGCGGTTACCTATACCGAG 5256523 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||| | |||||||| || ||||||| ||||||| || ||||||| ||||| Sbjct 5256524 CATGCAAAAAGAAAGACTGTAACTGCCATGGACGTCGTCTACGCCCTGAAACGCCAAGG 5256582 >seq2867 Length=5423913 Score = 152 bits (168), Expect = 8e-33 Identities = 184/249 (74%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 16453 TCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTG 16511 |||| || |||||||||||||| ||||| |||||||| || ||||| ||||| | |||| Sbjct 4771735 TCTTGCGTGATAACATCCAAGGTATCACGAAGCCAGCCATTCGTCGATTGGCTAGACGTG 4771794 Query 16512 GTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCT 16571 |||| || |||||| | ||||| ||| |||| ||||||| | | ||| | || ||| Sbjct 4771795 GTGGTGTTAAGCGTATTTCTGGCTTGATCTACGAAGAGACCAGAGGTGTCCTAAAAGTCT 4771854 Query 16572 TCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTG 16631 | || | | |||||| | ||||||| | |||||||||||||| || | ||||||| Sbjct 4771855 TTCTGGAAAACGTTATTCGTGATGCTGTAACTTATACCGAGCACGCCAAGAGGAAGACTG 4771914 Query 16632 TCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTG 16691 | || | ||||| | || || || ||||||||||||| | | | || ||||| | Sbjct 4771915 TAACAGCTATGGACGTGGTTTACGCTCTGAAACGTCAAGGAAGAACCCTCTACGGTTTCG 4771974 Query 16692 GAAGTTAAT 16700 | |||||| Sbjct 4771975 GTGGTTAAT 4771983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070973158739