Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq3537 98.7 1e-15
seq4212 96.9 4e-15
seq3783 91.5 2e-13
>seq3537
Length=3457499
Score = 98.7 bits (108), Expect = 1e-15
Identities = 164/235 (70%), Gaps = 9/235 (4%)
Strand=Plus/Minus
Query 33100 TTATAAAtt---tttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATA 33156
||||| ||| |||| |||||| ||| || | ||||| |||||||||||||| ||
Sbjct 3065579 TTATACATTACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAATTCGATG 3065520
Query 33157 TATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGA 33216
||| | |||| ||| |||||||||||||| |||| ||| || | || || | |
Sbjct 3065519 TATTTACACATCCATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGCGTCAAA 3065460
Query 33217 AATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGT 33276
||||| | |||||| ||| ||||| ||| ||| ||| | || ||| | |
Sbjct 3065459 AATTCCTTTTCAATTTCTACGGCATCCATTACAATTGATTTCAC---ACGCTCAAATGAT 3065403
Query 33277 GG---ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328
|| || | | ||||||||||| ||||| |||||||||||||| | ||||
Sbjct 3065402 GGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCCCT 3065348
>seq4212
Length=4365329
Score = 96.9 bits (106), Expect = 4e-15
Identities = 188/275 (68%), Gaps = 2/275 (1%)
Strand=Plus/Minus
Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642
|||| | || ||||| || || | |||| | |||||||||| || || ||||| |
Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501
Query 63643 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701
| ||||| || ||| || || || ||| || || || || || ||| || || |
Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442
Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761
| |||||| || | || || | ||| ||||| || ||||| || || || ||||| |
Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382
Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821
|| ||||| | || ||| | | || | ||||||||||||| ||| || || |||
Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322
Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856
|| || ||||| || ||| | || | ||||| ||
Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333
|||| || || ||| |||||| | ||| | ||||| ||| || | |||||||||
Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239
Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393
|| | ||||||||| |||||||| | || || ||||| || ||||| |||||
Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179
Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446
| || || ||||| || ||||| || || || || || || |||||||||||
Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126
Score = 82.4 bits (90), Expect = 1e-10
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016
||||| ||| || |||||||||||||| || || ||| | ||||| || ||||| ||
Sbjct 3414070 CTAAAACTTTTCTTGGTTTCCTTGTGTAGGTTAGACACGTCAATTCTTGCAGCTAGTATA 3414011
Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076
|||||||| ||||||| || | || ||||| |||| ||||| | | | || | |
Sbjct 3414010 GCATAATCAGGATGTTTAGTTGCCATTGTAGCTGCAGTTTCAGCTGCTAAATTATCAAGT 3413951
Query 64077 TCTACCGTTGTTACTCCATTATATA 64101
|| || ||||||||| |||||
Sbjct 3413950 ATAACTGTAGTTACTCCAGAATATA 3413926
>seq3783
Length=2569584
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|| |||| | || ||||| |||||||||||||| |||| || ||||| || ||||
Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
| |||||||| |||||||| | | ||| ||||| |||| ||||| ||| | || |
Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991
Query 64075 ATTCTACCGTTGTTACTCCA 64094
|||| ||||||||||||
Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622911201438680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |