Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3537 98.7 1e-15 seq4212 96.9 4e-15 seq3783 91.5 2e-13 >seq3537 Length=3457499 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/235 (70%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 33100 TTATAAAtt---tttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATA 33156 ||||| ||| |||| |||||| ||| || | ||||| |||||||||||||| || Sbjct 3065579 TTATACATTACCTTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAATTCGATG 3065520 Query 33157 TATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGA 33216 ||| | |||| ||| |||||||||||||| |||| ||| || | || || | | Sbjct 3065519 TATTTACACATCCATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGCGTCAAA 3065460 Query 33217 AATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGT 33276 ||||| | |||||| ||| ||||| ||| ||| ||| | || ||| | | Sbjct 3065459 AATTCCTTTTCAATTTCTACGGCATCCATTACAATTGATTTCAC---ACGCTCAAATGAT 3065403 Query 33277 GG---ATGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 || || | | ||||||||||| ||||| |||||||||||||| | |||| Sbjct 3065402 GGCTTTTGTACGATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCCCT 3065348 >seq4212 Length=4365329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 188/275 (68%), Gaps = 2/275 (1%) Strand=Plus/Minus Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 |||| | || ||||| || || | |||| | |||||||||| || || ||||| | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 63643 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCAT 63701 | ||||| || ||| || || || ||| || || || || || ||| || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTT 3414442 Query 63702 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTG 63761 | |||||| || | || || | ||| ||||| || ||||| || || || ||||| | Sbjct 3414441 TCATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCG 3414382 Query 63762 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63821 || ||||| | || ||| | | || | ||||||||||||| ||| || || ||| Sbjct 3414381 TTGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAG 3414322 Query 63822 TCTCGTTCGTAAATAATAACCGAGTTGAGTTTATC 63856 || || ||||| || ||| | || | ||||| || Sbjct 3414321 TCACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 |||| || || ||| |||||| | ||| | ||||| ||| || | ||||||||| Sbjct 3416298 TTCTGCATATCCGCATCCCATAAATCTCTGGAGATTAAATCTCGCAGTAAATGCGGATTG 3416239 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | ||||||||| |||||||| | || || ||||| || ||||| ||||| Sbjct 3416238 ACAATGATAAATTCTCCCGACAATACACGCCTCACATAGATATTGCTTGTATATGGTTCA 3416179 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 62446 | || || ||||| || ||||| || || || || || || ||||||||||| Sbjct 3416178 ATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCATAGGTGC 3416126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 63957 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 64016 ||||| ||| || |||||||||||||| || || ||| | ||||| || ||||| || Sbjct 3414070 CTAAAACTTTTCTTGGTTTCCTTGTGTAGGTTAGACACGTCAATTCTTGCAGCTAGTATA 3414011 Query 64017 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 64076 |||||||| ||||||| || | || ||||| |||| ||||| | | | || | | Sbjct 3414010 GCATAATCAGGATGTTTAGTTGCCATTGTAGCTGCAGTTTCAGCTGCTAAATTATCAAGT 3413951 Query 64077 TCTACCGTTGTTACTCCATTATATA 64101 || || ||||||||| ||||| Sbjct 3413950 ATAACTGTAGTTACTCCAGAATATA 3413926 >seq3783 Length=2569584 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 || |||| | || ||||| |||||||||||||| |||| || ||||| || |||| Sbjct 868872 CATTAAAAACTTCCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 868931 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| |||||||| | | ||| ||||| |||| ||||| ||| | || | Sbjct 868932 TTGCATAATCTGGATGTTGATTGATCATAGTCGCTGCAGTTTCAGCTGCTAGATTATCTA 868991 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| |||||||||||| Sbjct 868992 ATTCGGTTGTTGTTACTCCA 869011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622911201438680