Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3537 224 7e-54 seq4435 125 5e-24 seq3869 116 2e-21 seq3876 113 3e-20 seq4552 111 1e-19 seq4069 98.7 7e-16 >seq3537 Length=3457499 Score = 224 bits (248), Expect = 7e-54 Identities = 322/452 (71%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 6152 ATCGACCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTA 6211 |||| ||| ||||||| | | ||||| ||||| ||||| || || || || || || Sbjct 3056035 ATCGGTCACCATGGGGAGCGTAAACGTCAATCGCAATGTCAGCGATGCTTTTTATCGTTA 3056094 Query 6212 CAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCAT 6271 || |||||||| ||| || ||||| || || |||||||| |||||||| || || || Sbjct 3056095 TAAGATGCCGCGGATCCAAGCGAAGGTGGAAGGCAAGGGAAATGGTATTAAGACAGTGAT 3056154 Query 6272 TGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATA 6331 ||||||||| || || || |||||| |||| || || || || || ||||| || || Sbjct 3056155 CGTCAACATGGTGGATGTGGCGAAGGCGATCGGTCGTCCGGCTACGTATCCGACCAAGTA 3056214 Query 6332 TTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGT 6391 ||| || ||||| | |||||||| ||||||||||| ||| ||||| |||||||| || Sbjct 3056215 TTTTGGTTGCGAGTTGGGCGCTCAAACGCAGTTTGACTTCAAGAACGAACGCTTCATTGT 3056274 Query 6392 TAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTT 6451 ||||| || || | | | ||||| ||||| | | || || ||||| || || | Sbjct 3056275 CAACGGTTCACACGATGCGACAAAGCTACAGGATCTGTTGGATGGTTTTATCCGAAAATA 3056334 Query 6452 TGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATTGTGTCTACCAAGAGAAA 6511 ||| || || | | ||||| || ||||| ||||| | || || | | |||| | Sbjct 3056335 TGTTCTTTGCCCAGCCTGCGACAATCCGGAAACCGAATTAATGGTCAGTTCGAAGAAAGG 3056394 Query 6512 CACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAGCTGGATTTATCA--CAC 6569 || ||||| ||||| ||||||||||| || | |||||| || || | || ||| Sbjct 3056395 AACGATCTCGCAGGGTTGCAAAGCGTGTGGACATCATGGCCTTCTTGA--GAGCAATCAC 3056452 Query 6570 AAACTCAACACCTTCATACTGAAGAATCCTCC 6601 || | ||||| | ||| |||| ||||| || Sbjct 3056453 AAGTTGAACACGTACATCTTGAAAAATCCACC 3056484 >seq4435 Length=230038 Score = 125 bits (138), Expect = 5e-24 Identities = 74/77 (96%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15073 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 15132 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 15133 GGTCGTATTTAGCCTTA 15149 >seq3869 Length=61123 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| Sbjct 26532 CTCTCTCTTCAAAATTCTTTTCAACTTTCCCTCACGGTACTTATTCGCTATCGGTCTCGT 26591 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 26592 GGTCGTATTTAGCCTTA 26608 >seq3876 Length=890137 Score = 113 bits (124), Expect = 3e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | ||| | | |||||||| |||||| ||||| ||||||||||||| Sbjct 521514 CATT-CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAAT 521572 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || || |||| |||| || | || ||||| || || || | || || ||||||| Sbjct 521573 CGGATAAGGTACGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGG 521632 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| ||||| || || || ||| || ||||||| || || || | || Sbjct 521633 GTGGGATACCTTCCTTATCTTGGATCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCTT 521692 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||||| | || || || || || ||||| || |||||||| |||||||| Sbjct 521693 CAACTTCAAGGGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 521744 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||| | |||||||| || ||| ||||| ||||||||||| |||| Sbjct 520832 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAG 520891 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | |||||||| ||||| || | | ||| ||||| | | Sbjct 520892 AAAGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAG 520951 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||||| || ||||| | || || || |||| Sbjct 520952 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAA 521011 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || ||||| ||||| ||||| || ||||| Sbjct 521012 CTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||| | |||||||| || ||| || |||||||| ||||| |||| Sbjct 521060 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAG 521119 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||||||||| || || | | || ||||| | | Sbjct 521120 AAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAG 521179 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||||| || ||||| | || || || || | Sbjct 521180 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA 521239 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 521240 CTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||||| | |||||||| || ||| || |||||||| ||||| |||| Sbjct 521288 TACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAG 521347 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | ||||||||||| || || | | || ||||| | | Sbjct 521348 AAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAG 521407 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| ||||||| || ||||| | || || || || | Sbjct 521408 GGATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA 521467 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || ||||| || |||| |||||| || || |||||||| Sbjct 521468 CTTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| |||||||| || || ||||| ||||| || |||||||| | ||| |||| Sbjct 519936 CAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTC 519995 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||||||||||| || | | || ||||||| || | ||||||||| || Sbjct 519996 TTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATC 520055 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 |||||| |||||| || | || || || | ||||| || | ||| ||||| Sbjct 520056 TTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGT 520115 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || | || || || || |||||||| Sbjct 520116 TTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || |||||||| | ||| ||||||||||| ||||| ||||| | ||| | || Sbjct 520621 AAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCCATCT 520680 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||||||||||| || || | | || || || | |||| ||||| |||||| Sbjct 520681 TCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCC 520740 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTT 38285 ||||||| ||||| |||| | || || |||||||| ||||| || || Sbjct 520741 TGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGATGGTC 520800 Query 38286 TTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||| ||||| || ||||| Sbjct 520801 TTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || ||| || |||||||| || || || ||| ||| | || |||| || Sbjct 519718 TGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGC 519777 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || || || || || | ||||||||||| || | ||||||||| ||| |||||| Sbjct 519778 TTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCCTGAATTTTC 519837 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||||| || | || || || | ||||| || | ||| ||||||||||| || Sbjct 519838 GCTTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTACCAGTG 519897 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | || || || || |||||||| Sbjct 519898 AGAGTCTTGACAAAAATCTGCAT 519920 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || ||||| || || ||||| ||||| || |||||||| | ||| |||| Sbjct 520164 CAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTC 520223 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | |||||||||||||| || | | || ||||| | |||| ||||| ||||| Sbjct 520224 TTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTC 520283 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAG 38283 |||||| || ||||||| || || || | || |||||||| || || || | Sbjct 520284 TTGAATTTTGGCTTTGACATTCTCGATCGTGTC-CGACGCCTCAACTTCCAACGTGATGG 520342 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || ||||| || ||||| Sbjct 520343 TCTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 >seq4552 Length=86203 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| |||| |||||| ||| || ||||||||||| |||| Sbjct 3562 CATT-CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAAT 3504 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 |||| | | | | || || | |||||| || ||||| || || || || ||||| | Sbjct 3503 CAGAGAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCG 3444 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || |||||||| ||||| |||||||| | | ||| ||| | || Sbjct 3443 GGGGAATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTT 3384 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| | || || ||||||||||| | || ||||| || ||||||||| Sbjct 3383 CGACTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 || ||||| || ||||||||||| | | | |||| || | ||| || || || || Sbjct 4434 TCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAG 4375 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 |||| || |||||||| | |||| |||||||||||| |||||| |||||| || Sbjct 4374 ATTAAACGCTGTTGATCTGGAGGGATTCCTTCTTTGTCCTGAATTTTGGCCTTCACGTTT 4315 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | | ||| ||| | ||| ||||| | || || |||||||| || | |||||||| Sbjct 4314 TCAATAGTGTCTGAAGCTTCGACTTCAAGAGTGATGGTTTTACCTGTGAGAGTTTTCACA 4255 Query 38307 AATATCTGCAT 38317 || || ||||| Sbjct 4254 AAAATTTGCAT 4244 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| || |||| | ||||| ||||| ||||| ||| || ||||| || ||||| | Sbjct 4246 CATT-CCTCCTCGAAGACGCAGAACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGT 4188 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || | | | | || || | |||||| ||||| || || || || |||||||| | Sbjct 4187 CGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCG 4128 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | || ||||||||| ||||| ||| || || | | || ||| | || Sbjct 4127 GTGGAATTCCCTCTTTGTCCTGGATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAGCTT 4068 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| | ||||| |||||||| || | ||||||||||| || ||||| Sbjct 4067 CGACTTCGAGGGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 4016 >seq4069 Length=1127261 Score = 98.7 bits (108), Expect = 7e-16 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 38130 TTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATT 38189 ||||| ||||| ||||| |||| | ||| | || || | |||||| ||||| || || Sbjct 161735 TTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATG 161676 Query 38190 AGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGG 38249 || || |||||||| | || | || || |||||| || || ||| ||||||| | Sbjct 161675 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 161616 Query 38250 ACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAAT 38309 | ||||| || || || | || || ||||||||||| | |||||||||||| Sbjct 161615 ATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAG 161556 Query 38310 ATCTGCATG 38318 ||||||||| Sbjct 161555 ATCTGCATG 161547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334928328132713