Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3537 141 1e-28
seq4579 116 4e-21
seq4300 116 4e-21
>seq3537
Length=3457499
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173
|||||||||| || || | || |||||||| || | |||||| | | |||||||||||
Sbjct 3065265 CTTCGTCTCGCGAGATGAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 3065206
Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233
| |||||||| || | |||||||| ||| || || ||||| || || || |||||||
Sbjct 3065205 TCAGCCAAAAAATGGCTGCAAAACTGCCACTGAAGAAGATACCCTCGACTGCCGCAAATG 3065146
Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293
| || | |||||| | ||| | ||| | | ||||||| ||||| ||||||| |
Sbjct 3065145 CGACTACACGTTCAGGAAACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAG 3065086
Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344
| || ||| | |||||| ||||| || || || ||||||| | ||||||
Sbjct 3065085 CCTTCTTCCCCACACAAGGAAGTGTCTCAATCGCATTAAATAAGAAATCTC 3065035
Score = 118 bits (130), Expect = 1e-21
Identities = 139/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|| || || || || | || ||||||||| |||||||| | ||| || || ||||||||
Sbjct 3064185 ATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGA 3064126
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| || |||||||| | ||||| | || | ||| || ||| |||||||| | |||
Sbjct 3064125 AAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAGA 3064066
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|||||||| || |||||||| || || ||||| || || || | ||| ||||| | |
Sbjct 3064065 TTTTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTAT 3064006
Query 93542 TTCTCATC 93549
||||| ||
Sbjct 3064005 TTCTCGTC 3063998
Score = 89.7 bits (98), Expect = 6e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652
|||||||| | |||||||| || ||| | |||||||| ||||||||||| || || ||
Sbjct 3063787 ACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGGA 3063728
Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGTTGT 93712
|| ||||| ||||| || |||||||| || ||| |||| || | || || |||| |
Sbjct 3063727 TACTGAATAGGAAAAATTACAAAACGGTTTGGGCCTTCTTGGAGCAGTGGTTCCAGTTCT 3063668
Query 93713 GG 93714
||
Sbjct 3063667 GG 3063666
>seq4579
Length=2724224
Score = 116 bits (128), Expect = 4e-21
Identities = 82/91 (90%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| |||||||||||||||| || ||||||||||
Sbjct 2094291 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 2094232
Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||||||||| | |||||| || ||
Sbjct 2094231 GTTCGAACCCCACACTTAGCAAATTTTTTTT 2094201
>seq4300
Length=3477374
Score = 116 bits (128), Expect = 4e-21
Identities = 82/90 (91%), Gaps = 4/90 (4%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|||||||||||| |||||||||||||||| ||||| |||||||||| || ||||||||||
Sbjct 738918 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 738859
Query 126327 GTTCGAACCCCACACCTG--ACAAATTATT 126354
|||||||||||||||||| ||||||| ||
Sbjct 738858 GTTCGAACCCCACACCTGGCACAAATTTTT 738829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556828620406520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |