Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3537 141 1e-28 seq4579 116 4e-21 seq4300 116 4e-21 >seq3537 Length=3457499 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 |||||||||| || || | || |||||||| || | |||||| | | ||||||||||| Sbjct 3065265 CTTCGTCTCGCGAGATGAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 3065206 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | |||||||| || | |||||||| ||| || || ||||| || || || ||||||| Sbjct 3065205 TCAGCCAAAAAATGGCTGCAAAACTGCCACTGAAGAAGATACCCTCGACTGCCGCAAATG 3065146 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | |||||| | ||| | ||| | | ||||||| ||||| ||||||| | Sbjct 3065145 CGACTACACGTTCAGGAAACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAG 3065086 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | || ||| | |||||| ||||| || || || ||||||| | |||||| Sbjct 3065085 CCTTCTTCCCCACACAAGGAAGTGTCTCAATCGCATTAAATAAGAAATCTC 3065035 Score = 118 bits (130), Expect = 1e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||||||||| |||||||| | ||| || || |||||||| Sbjct 3064185 ATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGA 3064126 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | || | ||| || ||| |||||||| | ||| Sbjct 3064125 AAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGACTGAATCTCTCAATCAGA 3064066 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || |||||||| || || ||||| || || || | ||| ||||| | | Sbjct 3064065 TTTTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAGACATGAGAGATAAAGTAT 3064006 Query 93542 TTCTCATC 93549 ||||| || Sbjct 3064005 TTCTCGTC 3063998 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||||||| | |||||||| || ||| | |||||||| ||||||||||| || || || Sbjct 3063787 ACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGGA 3063728 Query 93653 TATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCTAGTTGT 93712 || ||||| ||||| || |||||||| || ||| |||| || | || || |||| | Sbjct 3063727 TACTGAATAGGAAAAATTACAAAACGGTTTGGGCCTTCTTGGAGCAGTGGTTCCAGTTCT 3063668 Query 93713 GG 93714 || Sbjct 3063667 GG 3063666 >seq4579 Length=2724224 Score = 116 bits (128), Expect = 4e-21 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 2094291 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 2094232 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||||| || || Sbjct 2094231 GTTCGAACCCCACACTTAGCAAATTTTTTTT 2094201 >seq4300 Length=3477374 Score = 116 bits (128), Expect = 4e-21 Identities = 82/90 (91%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 738918 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 738859 Query 126327 GTTCGAACCCCACACCTG--ACAAATTATT 126354 |||||||||||||||||| ||||||| || Sbjct 738858 GTTCGAACCCCACACCTGGCACAAATTTTT 738829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556828620406520