Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq3876 113 5e-20
seq4069 109 6e-19
seq4552 98.7 1e-15
>seq3876
Length=890137
Score = 113 bits (124), Expect = 5e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | |||||| | |||| ||||| ||| || ||||| || |||||||| ||
Sbjct 521290 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521349
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || ||||| || |||||||| ||||| | |||||| || | ||
Sbjct 521350 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGG 521409
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTT-GAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| | || ||||| ||| || | ||| || | | | |||||| | || ||
Sbjct 521410 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGAC 521468
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| |||||||||||| || ||||| ||||| |||||||| ||||||
Sbjct 521469 TTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 521517
Score = 102 bits (112), Expect = 9e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | |||||| | |||| ||||| ||| || ||||| || |||||||| ||
Sbjct 521062 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521121
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| | || || ||||| || |||||||| ||||| | |||||| || | ||
Sbjct 521122 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGG 521181
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTT-GAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| | || ||||| ||| || | ||| || | | | |||||| | || ||
Sbjct 521182 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGAC 521240
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||||||||| || |||| ||||| || || ||||||||
Sbjct 521241 TTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | |||||| | |||| ||||| ||| ||||| || ||||||||||| ||
Sbjct 520834 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGAA 520893
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || ||||| || || || || ||||| | ||||| || | ||
Sbjct 520894 AGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGG 520953
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTC-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| | || |||| | ||| || | | |||| | | | |||||| | || ||
Sbjct 520954 ATTCCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAAC 521012
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||||||| || || |||| ||||| || || ||||||||
Sbjct 521013 TTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060
>seq4069
Length=1127261
Score = 109 bits (120), Expect = 6e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 46406 TTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 46465
||||||||||| || ||||| |||||||| | || || || || ||||||||||| ||
Sbjct 161735 TTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGATG 161676
Query 46466 AAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC 46525
| ||||| || || | ||| | | |||||||||| |||||| ||||| || |
Sbjct 161675 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 161616
Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585
| || ||| | || || || | ||||||||||| ||||| || ||||| || |||
Sbjct 161615 ATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAG 161556
Query 46586 ATTTGCAT 46593
|| |||||
Sbjct 161555 ATCTGCAT 161548
>seq4552
Length=86203
Score = 98.7 bits (108), Expect = 1e-15
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||||| || ||||| | |||| ||||| ||||| ||||| ||||
Sbjct 3332 TGCCTCCACGAAGACGCAGAACAAGATGAAGTGTAGATTCCTTCTGGATGTTGTAATCGG 3273
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || || | | || || || ||||| || || || || || || ||||| || | |
Sbjct 3272 AAAGGGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATTAAACGTTGCTGATCTGGAG 3213
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | || ||||| |||||| |||| || | | ||||| | |||||
Sbjct 3212 GAATACCTTCTTTGTCTTGGATCTTAGCTTTGACGTTCTCTATAGTGTCAGAAGCTTCCA 3153
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct 3152 CCTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTTACAAAGATTTGCAT 3104
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||||||| | ||| || || ||||| || ||||| ||
Sbjct 3786 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3727
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | ||| || || ||||| ||||| || |||||||| | ||
Sbjct 3726 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3667
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || ||||| |||||| || | | | | ||||| | ||| ||
Sbjct 3666 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3607
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||||||||| || || || ||||| || ||||||||||||
Sbjct 3606 TCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3559
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||| || | ||| || |||||||| |||||||||||
Sbjct 4242 CCTCCTCGAAGACGCAGAACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGGAA 4183
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| | | || || || || || |||||||| |||| ||||| || || | ||
Sbjct 4182 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTGGA 4123
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | ||| |||||| ||| || ||| | | | | ||||| | ||| ||
Sbjct 4122 ATTCCCTCTTTGTCCTGGATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACT 4063
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | || |||||||| || || || ||||| || ||||||||||||
Sbjct 4062 TCGAGGGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 4015
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | ||||| |||||||| | ||| || || ||||| || ||||| ||
Sbjct 4014 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3955
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || | |||| || | ||| || || ||||| ||||| || |||||||| | ||
Sbjct 3954 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3895
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || || ||||| ||| || || | | | | ||||| | ||| ||
Sbjct 3894 ATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3835
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||||||||| || || || ||||| || ||||||||||||
Sbjct 3834 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565205736285960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |