Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq4552 114 9e-21 seq3876 95.1 8e-15 >seq4552 Length=86203 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| ||||||||| ||||||||||| | Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | |||||| || ||||||| | |||||||||||||| ||| Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| ||||| ||| | | | | ||||||| ||| || Sbjct 3438 ATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGACT 3379 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || | || || ||||||||||| | ||| || || |||||||||||| Sbjct 3378 TCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| |||||| || || ||||| || | Sbjct 4014 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3955 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | || ||||| ||||| || | || || ||||| ||||| || | || Sbjct 3954 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3895 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| ||||| ||| | | ||| |||||| | | ||| || Sbjct 3894 ATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3835 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||| || |||||||| || | |||||| |||||||| ||||| Sbjct 3834 TCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | |||||| |||| ||| | ||| |||||| || || ||||| || | Sbjct 3786 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3727 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | || ||||| ||||| || | || || ||||| ||||| || | || Sbjct 3726 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3667 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || || ||| | | ||| |||||| | | ||| || Sbjct 3666 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3607 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || |||||||| || | |||||| |||||||| ||||| Sbjct 3606 TCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 >seq3876 Length=890137 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || |||||||||| ||| ||||||||| || || || || | Sbjct 521290 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521349 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | ||||| ||| | ||||| || | ||||||||| | || Sbjct 521350 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGG 521409 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| ||| | | | | ||||| | || || Sbjct 521410 ATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACT 521469 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || | ||||| || ||||||||||| Sbjct 521470 TCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || |||||||||||||| ||| || || || |||||||| | Sbjct 520378 CCACCACGTAAACGAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAA 520437 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| | || || | ||||| ||| | || || || | |||||| |||| ||| Sbjct 520438 AGTGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGG 520497 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTCCAC 39671 | ||||| ||||| |||||| ||| | || | | ||||| | ||| ||| || Sbjct 520498 ATTCCTTCCTTGTCCTGAATTTTTGCTTTCACGTTCTCAATCGTGTCCGACGC-TTCGAC 520556 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| ||||| ||||| || | ||||| || || || ||||| Sbjct 520557 TTCCAGAGTGATTGTCTTACCGGTGAGCGTTTTGACAAAAATTTGCAT 520604 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || |||||||||| ||| ||||||||| || || || || | Sbjct 521062 CCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAA 521121 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| || | ||||| ||| | || || || | ||||||||| | || Sbjct 521122 AGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGG 521181 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| |||||| ||| | | | | ||||| | || || Sbjct 521182 ATTCCTTCTTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACT 521241 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || || ||||| ||||| || ||||| Sbjct 521242 TCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347350028219759