Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq3876 122 6e-23 seq4069 116 2e-21 seq4552 111 1e-19 >seq3876 Length=890137 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | |||| |||||| |||||||| ||||| ||||| | || |||| || Sbjct 521307 AACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 521366 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || || | || ||||| ||| | || | || || ||||| Sbjct 521367 AAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 521426 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | |||| ||| ||||| || || | || |||||||| Sbjct 521427 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTTTT 521486 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || || || || |||||||||||||| Sbjct 521487 TCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 |||||||||||| || | || ||| |||||||||||||| || ||||| | || | Sbjct 519933 CCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCC 519992 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || ||||||||||||||||| || | | ||||| || | || | || || || Sbjct 519993 GTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTT 520052 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 || ||| ||| || ||| | | |||| || |||||||| || | || || Sbjct 520053 ATCTTGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGAT 520112 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || ||||||||||| ||||| ||||||||| Sbjct 520113 AGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCATA 520149 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| |||||||| || | |||| ||| || |||||||| ||||| |||||| | || | Sbjct 520617 CCTTAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCC 520676 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| || |||||||||||||| || || | | |||||||| | || | || ||||| Sbjct 520677 ATCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTT 520736 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| ||| || ||| ||| | |||| ||| |||||||| || | || || Sbjct 520737 GTCCTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGAT 520796 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| ||||| || | || || || || || |||||| Sbjct 520797 GGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 520833 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | |||| |||||| |||||||| ||||| ||||| | || |||| || Sbjct 521079 AACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 521138 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||||||||| || || | || ||||| ||| | || | || || ||||| Sbjct 521139 AAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 521198 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | |||| ||| ||||| || || | || |||||||| Sbjct 521199 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTTTT 521258 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || || || || || |||||| Sbjct 521259 TCCGGTCAATGTTTTGACGAAAATTTGCATA 521289 Score = 102 bits (112), Expect = 5e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | |||| ||| |||||||| || ||||| ||||| | || |||| || Sbjct 520851 AACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTC 520910 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||||| ||||| || | || |||||| || | || | || || ||||| Sbjct 520911 AAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGGATTCCTTCTTTGTCTTG 520970 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || |||||| | | |||| ||| |||||||| || | || ||||| || Sbjct 520971 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAACTTCCAACGTGATGGTCTT 521030 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | || || || || || |||||| Sbjct 521031 TCCGGTCAATGTTTTGACGAAAATTTGCATA 521061 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| ||||||||||| |||||||| || | | ||| |||| || ||||| Sbjct 519717 GTGAAGTGTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTG 519776 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 || || || || || |||| ||| || || | || | || || || || ||| || Sbjct 519777 CTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCCTGAATTTT 519836 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 | ||| ||| | | |||| || |||||||| || | || || ||||| || || Sbjct 519837 CGCTTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTACCAGT 519896 Query 34958 GAGAGTCTTCACAAAGATCTGCATA 34982 ||||||||| ||||| ||||||||| Sbjct 519897 GAGAGTCTTGACAAAAATCTGCATA 519921 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||||||||| || || | || ||| |||||||||||||| || ||||| | || | Sbjct 520161 CCTCAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCC 520220 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 || || ||||||||||||||||| || | | ||||| ||| | || | || ||||| Sbjct 520221 GTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTT 520280 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||| ||| || |||||| || || |||| || |||||||| || | || Sbjct 520281 GTCTTGAATTTTGGCTTTGAC--ATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTG 520338 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| ||||| || | ||||| || || || ||||| Sbjct 520339 ATGGTCTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 >seq4069 Length=1127261 Score = 116 bits (128), Expect = 2e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 |||| || || ||||| || || || | ||| |||| ||||| ||||| ||||| || | Sbjct 161737 CTTTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGA 161678 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | ||||| || || ||| |||| | ||||||||||| ||||| ||||| || Sbjct 161677 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATT 161620 Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 || || | || |||||| || |||| ||| |||||||| |||||||| || ||||| Sbjct 161619 CTCGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCAC 161560 Query 34970 AAAGATCTGCAT 34981 ||||||||||| Sbjct 161559 GAAGATCTGCAT 161548 >seq4552 Length=86203 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| |||| |||||| ||||| ||||| || | Sbjct 3560 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAG 3501 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || ||| |||| || || ||||| || ||||| || || || ||||| || | | Sbjct 3500 AGAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGG 3441 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| || || ||| || | | || | || || || | Sbjct 3440 GAATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGA 3381 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 3380 CTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| || ||||||||| ||||||||||| | Sbjct 3788 TTCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTG 3729 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | || |||| |||||| || || || || | ||||||||||| | | Sbjct 3728 AGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 3669 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| ||| ||| | |||| | ||| ||| |||| Sbjct 3668 GAATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3609 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct 3608 CTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||||||||| |||| |||||| || ||||| ||||| | Sbjct 4244 TTCCTCCTCGAAGACGCAGAACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGG 4185 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| ||| |||| ||||| ||||| ||||| || || || || || || || | | Sbjct 4184 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTG 4125 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||| ||||| || || || ||| | | || | || || || | Sbjct 4124 GAATTCCCTCTTTGTCCTGGATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGA 4065 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| |||||||| || |||||||| ||||| ||||| ||||| Sbjct 4064 CTTCGAGGGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 4016 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | || ||||| |||| || ||||||||| ||||||||||| | Sbjct 4016 TTCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTG 3957 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || | | | || |||| |||||| || || || || | ||||||||||| | | Sbjct 3956 AGAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAG 3897 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| || || ||| ||| | |||| | ||| ||| |||| Sbjct 3896 GAATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3837 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||||||| || |||||||| ||||| ||||| ||||| Sbjct 3836 CTTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324615309229944