Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3537 113 5e-20 seq4212 105 8e-18 >seq3537 Length=3457499 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| || ||||||||||||||||| || || ||||| || || ||||| | |||||| Sbjct 3064161 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 3064102 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || | || || || ||||| || | || |||||||||||| || |||||| | Sbjct 3064101 GGAATTTTCACCTCCTGACTGAATCTCTCAATCAGATTTTCATTAACGATACCATCAGAA 3064042 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421 || ||||| |||||||| ||||| ||||| | ||| || || || Sbjct 3064041 GCGGCAAAGAATGCTAAGACATGAGAGATAAAGTATTTCTCGTCGGA 3063995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520 ||||||||| | ||||||||||| || | |||||||||||||| | ||| |||||| | Sbjct 3063788 TACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGG 3063729 Query 19521 ATATTGTATAGGAAATATAACAAA 19544 ||| || |||||||| || ||||| Sbjct 3063728 ATACTGAATAGGAAAAATTACAAA 3063705 >seq4212 Length=4365329 Score = 105 bits (116), Expect = 8e-18 Identities = 114/150 (76%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACT 47368 ||| ||||| ||||| ||||||||| || | ||| ||| || ||| ||||| || Sbjct 3416248 ATGCGGATTGACAATGATAAATTCTCCCGACAATAC---ACGCCTCACATAGATATTGCT 3416192 Query 47369 TGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428 |||||||||||| |||||||| ||||| || ||||| || || || || || || ||||| Sbjct 3416191 TGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCAT 3416132 Query 47429 GGATGCAACTAATAAGCTATTTCTTACTCC 47458 | ||| | ||| | | |||||||||||| Sbjct 3416131 AGGTGCTATTAAAAGGGAATTTCTTACTCC 3416102 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 || ||||||||||| | ||| || | || || ||||||||||| |||||||| || || Sbjct 3414925 TTTCTTTTAAGTTCCAAAAAATCAAAAATGTCGGCATGCCATGGCTCTAAATAGATAGCA 3414866 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA-AAC 48397 | | || |||| ||||||||| |||||||| | ||| |||| ||| |||||| ||| Sbjct 3414865 AACGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAAATGGCCATATCGTTATACAAC 3414806 Query 48398 TCTTAACAT 48406 | |||| || Sbjct 3414805 T-TTAAAAT 3414798 Score = 82.4 bits (90), Expect = 9e-11 Identities = 124/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922 |||| ||| | || | || |||||||||| ||| |||||||| || || ||| || Sbjct 3415541 TAACGAACATGTTGACAGCGATAGATGCTAAATTGCATACAGCGACTTCTCCAGGACCAG 3415482 Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982 |||| || ||||| | || | || | ||||||||||| || | || ||||||| Sbjct 3415481 AGTATTCAATAATTTCGGTGCACAAGTTGCTGCATTTGATAGTGCCTATATGCTGATGAT 3415422 Query 47983 TATTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 | | | | || || || |||||||||||| |||||||||||||||||| Sbjct 3415421 T-TGATTTTCGATTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTA 3415368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562076317137720