Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq3537 113 5e-20
seq4212 105 8e-18
>seq3537
Length=3457499
Score = 113 bits (124), Expect = 5e-20
Identities = 125/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314
||||| || ||||||||||||||||| || || ||||| || || ||||| | ||||||
Sbjct 3064161 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 3064102
Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374
| || | || || || ||||| || | || |||||||||||| || |||||| |
Sbjct 3064101 GGAATTTTCACCTCCTGACTGAATCTCTCAATCAGATTTTCATTAACGATACCATCAGAA 3064042
Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGA 19421
|| ||||| |||||||| ||||| ||||| | ||| || || ||
Sbjct 3064041 GCGGCAAAGAATGCTAAGACATGAGAGATAAAGTATTTCTCGTCGGA 3063995
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACG 19520
||||||||| | ||||||||||| || | |||||||||||||| | ||| |||||| |
Sbjct 3063788 TACTTCTTCTATGGTCCAAAAAGAGGCTACGGCTTTTTTATACATATCCCAGATATCAGG 3063729
Query 19521 ATATTGTATAGGAAATATAACAAA 19544
||| || |||||||| || |||||
Sbjct 3063728 ATACTGAATAGGAAAAATTACAAA 3063705
>seq4212
Length=4365329
Score = 105 bits (116), Expect = 8e-18
Identities = 114/150 (76%), Gaps = 6/150 (4%)
Strand=Plus/Minus
Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACT 47368
||| ||||| ||||| ||||||||| || | ||| ||| || ||| ||||| ||
Sbjct 3416248 ATGCGGATTGACAATGATAAATTCTCCCGACAATAC---ACGCCTCACATAGATATTGCT 3416192
Query 47369 TGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCAT 47428
|||||||||||| |||||||| ||||| || ||||| || || || || || || |||||
Sbjct 3416191 TGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTCGAGGCCGTTGGCAT 3416132
Query 47429 GGATGCAACTAATAAGCTATTTCTTACTCC 47458
| ||| | ||| | | ||||||||||||
Sbjct 3416131 AGGTGCTATTAAAAGGGAATTTCTTACTCC 3416102
Score = 91.5 bits (100), Expect = 2e-13
Identities = 99/129 (77%), Gaps = 2/129 (2%)
Strand=Plus/Minus
Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338
|| ||||||||||| | ||| || | || || ||||||||||| |||||||| || ||
Sbjct 3414925 TTTCTTTTAAGTTCCAAAAAATCAAAAATGTCGGCATGCCATGGCTCTAAATAGATAGCA 3414866
Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATA-AAC 48397
| | || |||| ||||||||| |||||||| | ||| |||| ||| |||||| |||
Sbjct 3414865 AACGCTCCGGGTCTTTTATTACCGCCTTGATCAACATAAATGGCCATATCGTTATACAAC 3414806
Query 48398 TCTTAACAT 48406
| |||| ||
Sbjct 3414805 T-TTAAAAT 3414798
Score = 82.4 bits (90), Expect = 9e-11
Identities = 124/175 (71%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 47863 TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAG 47922
|||| ||| | || | || |||||||||| ||| |||||||| || || ||| ||
Sbjct 3415541 TAACGAACATGTTGACAGCGATAGATGCTAAATTGCATACAGCGACTTCTCCAGGACCAG 3415482
Query 47923 TATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGAT 47982
|||| || ||||| | || | || | ||||||||||| || | || |||||||
Sbjct 3415481 AGTATTCAATAATTTCGGTGCACAAGTTGCTGCATTTGATAGTGCCTATATGCTGATGAT 3415422
Query 47983 TATTNNNNTTG-TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036
| | | | || || || |||||||||||| ||||||||||||||||||
Sbjct 3415421 T-TGATTTTCGATTGCAATGATCTTTGTAAAGCATATAAGGTGTTCCAGTTTCTA 3415368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562076317137720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |