Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3876 134 2e-26 seq4552 111 2e-19 seq3537 98.7 1e-15 >seq3876 Length=890137 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| |||||||| ||| | || || || | ||| Sbjct 519920 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 519861 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||||| ||||| || |||||||||||||| ||||| || ||| Sbjct 519860 GACACGATCGAAAACGTGAAAGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 519801 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| |||||| || || |||||||| || ||| | |||||||| || |||||| Sbjct 519800 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 519741 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || ||||| | || | || | |||||||| Sbjct 519740 ATTCAGAAAGAGTCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 519694 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| |||||||| || || || |||||||| | ||| Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521229 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| |||||||| || |||||||| || Sbjct 521228 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521169 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | ||||| || ||||| |||||| | | ||| | || || || || Sbjct 521168 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521109 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || || ||||| || Sbjct 521108 ATTCAAAAAGAATCCACACTGCATTTGGT 521080 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| |||||||| ||| | || || || | ||| Sbjct 520148 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 520089 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||||| ||||||||||||||||| ||||| || || Sbjct 520088 GACACGATCGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAG 520029 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||| || ||||||||||| | | || | || |||||||| Sbjct 520028 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAAC 519969 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || ||||| || || || | | |||||| Sbjct 519968 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGGCTTCGCGGCGGT 519921 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| ||||| || || || || ||||| || | ||| Sbjct 521060 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACGTTGGAAGTTGAGGCATCT 521001 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || ||| ||||| ||||| |||||||| || ||||| || || Sbjct 521000 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 520941 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| || || ||||| |||||| | | || | || || || ||| Sbjct 520940 CAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 520881 Query 156003 AT 156004 || Sbjct 520880 AT 520879 Score = 107 bits (118), Expect = 3e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| ||||| || || ||||| ||||| || | ||| Sbjct 520832 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACATTGGAAGTTGAGGCATCT 520773 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| || || || ||||| || ||||| || || Sbjct 520772 GACACGATTGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGACCAG 520713 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| || ||||| |||||| | | || | || || || || Sbjct 520712 CAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCCTTTCTGACTACAAC 520653 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 || || ||| || | || | ||||| || ||||| Sbjct 520652 AT-TCAAAAGGAATCCACATTGCATTTGGTTTTAAG 520618 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | || ||||| || ||||| || || || || ||||| || | || Sbjct 520377 AATGCAAATTTTCGTCAAGACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 520318 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| ||||| || ||||| || |||||||| || Sbjct 520317 GGACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 520258 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||| | |||||| || ||||||||||| | | || | || |||||||| Sbjct 520257 GCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAA 520198 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || |||||||| || || | | |||||| Sbjct 520197 CATTCAGAAGGAATCTACCCTGCATTTAGTTTTGAGGCTTCGCGGCGGT 520149 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | || || || || || || | |||||||||| || Sbjct 520604 ATGCAAATTTTTGTCAAAACGCTCACCGGTAAGACAATCACTCTGGAAGTCGAAGCGTCG 520545 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||||| || || || ||||| || || || || || Sbjct 520544 GACACGATTGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCCCCGGACCAG 520485 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||| || ||||| ||||| | || | ||||||||||| Sbjct 520484 CAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGACGGTCGCACACTTTCAGATTATAAC 520425 Query 156003 AT 156004 || Sbjct 520424 AT 520423 >seq4552 Length=86203 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | |||||||||| ||| Sbjct 3332 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCA 3391 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||| |||||| ||||| ||||| ||||| || || || || || || Sbjct 3392 GACACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAAGAGGGAATTCCCCCGGATCAG 3451 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||||| ||| || || || || |||||| ||||||| | || ||||||||| Sbjct 3452 CAGCGTCTGATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTCTCTGATTATAAT 3511 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 3512 ATTCAAAAAGAATCCACACTTCAT 3535 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| || || | ||||| |||| || Sbjct 3787 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 3846 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||| ||| |||||| ||||| ||||||||||| ||||| || || Sbjct 3847 TGACACAATAGAAAACGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3906 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | || ||||| ||| | ||||| || || | ||||| ||||| Sbjct 3907 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3966 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 3967 CATCCAGAAAGAATCTACTCTTCAT 3991 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| || | ||||| | || || ||||| || || | ||||| |||| || Sbjct 3559 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3618 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || |||||| ||| ||| || ||||| ||||||||||| ||||| || || Sbjct 3619 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3678 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | ||||| | || ||||| ||| | ||||| || || | ||||| ||||| Sbjct 3679 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3738 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 3739 CATCCAGAAAGAATCTACTCTTCAT 3763 >seq3537 Length=3457499 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 |||||||| | ||| |||||||| || || | |||||||||||| |||||||| || Sbjct 3064203 TTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATA 3064144 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 |||| || || || ||||| | ||| || | | || |||||| || | ||| | Sbjct 3064143 TTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGGAATTTTCACCTCCTGA 3064084 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 ||||| || | || ||| |||||||| ||||| |||| || || || ||||| || Sbjct 3064083 CTGAATCTCTCAATCAGATTTTCATTAACGATACCATCAGAAGCGGCAAAGAATGCTAAG 3064024 Query 18590 ACAT 18593 |||| Sbjct 3064023 ACAT 3064020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731829706946800