Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4008 104 7e-17 seq4059 102 2e-16 seq4421 100 8e-16 >seq4008 Length=1725869 Score = 104 bits (114), Expect = 7e-17 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| ||||| ||||| || || ||||||| || || ||||||||| | Sbjct 1580360 AATAAATCTCTAACACGCCGGGCACCCTGACCAACGAGGATCTCATCAAATTCAGGGCCT 1580301 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 | ||| || | ||||| |||| ||||| || || ||||| | ||| | | |||||| Sbjct 1580300 GCTACATGGAAGAATGGTACACCGGCTTCTCCAGCAACTGCACGCGCTAACAATGTCTTT 1580241 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGAC 289266 || ||||| || || || | || | |||||||| || | |||| | ||| || || Sbjct 1580240 CCCGTTCCTGGCGGACCGACCAACAATACTCCCTTCGGCAATTTTCCACCAAGGGCGGA- 1580182 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||| ||||| |||||||||||||||| | | | ||| || | |||||||||| Sbjct 1580181 --AAATTTATCAGGATTCTTTAAAAATTCTACTACATTCAGAAGCTCTTGTTTTGCCTCA 1580124 Query 289327 TC 289328 || Sbjct 1580123 TC 1580122 >seq4059 Length=1225554 Score = 102 bits (112), Expect = 2e-16 Identities = 174/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| ||| || |||||||||||||| |||||||| || ||| ||||| || || Sbjct 1021913 TTCCATAGCCTTTATCAAACGACGCTGAATGTAACCAGTCTCAGCTGTCTTTACGGCGGT 1021854 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692 ||| || ||||| ||||||| ||||| || || ||| | | ||| | || ||| || | Sbjct 1021853 ATCGATAAGACCTTCACGACCGCCCATTGCGTGAAAGTAGAACTC-TGAGGGCGTGAGAC 1021795 Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGG 302749 | | | | | || |||| || |||||||| | ||| || || |||| || ||| Sbjct 1021794 CAGCGAGATATGAATTCTCGACAAAACCACGGGACTCTGGTCCGTAATCATC---CTTAA 1021738 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | || |||||||| || || || | || | || || || || || ||||| || | Sbjct 1021737 TGAAATGTGGCAGTGTTCTCTTACGGAAACCAAAGGGTATCCGTTTACCTTCAACATTTT 1021678 Query 302810 GCTGTCC 302816 |||| || Sbjct 1021677 GCTGGCC 1021671 Score = 86.0 bits (94), Expect = 2e-11 Identities = 119/164 (73%), Gaps = 11/164 (7%) Strand=Plus/Minus Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCA-ACGTT 303695 ||||||||||| ||||| |||||||| |||||||| || ||| ||| | || | || Sbjct 1020817 TGTAAATTCATTTCATCCCCGTCAAAGTCAGCATTGTATGGCGAAGTG-CAGCTTAAATT 1020759 Query 303696 CATCCGGAAAGTATCACCCTGCATCA---TAACACGGGCTTTATGACACATCATAGACAT 303752 ||| ||||| || | | | | || ||||||| ||||| ||||||| ||| Sbjct 1020758 CATGCGGAATGTGCTCCACGGAAGCACCTTAACACG------ATGACCCATCATACTCAT 1020705 Query 303753 TCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796 |||||||||| |||||||||||||| | ||| | || |||| Sbjct 1020704 CTTGTGTAGAGTAGGCTGACGATTGAAGATTACGAGATCGCCGT 1020661 >seq4421 Length=1573124 Score = 100 bits (110), Expect = 8e-16 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 ||||||||||| ||||||| || | ||||| ||||| ||| | || || |||| Sbjct 28552 GTGAAAATATA--TCTCGGACTGGCGGAATCCTTTCCACCAGAAAGTCTTGTACCGAATT 28495 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| | ||||| | |||||||||||||| || |||||||| || |||||| || Sbjct 28494 GACCGATGGGCTGTAGCAGATTAATGTTGTTGCTACCCACGAAATTCTGTGCGAGATTAA 28435 Query 60261 CAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319 | || | | ||| | | | |||||||||||||| |||||||||| | ||| || Sbjct 28434 CTATGGTCGCCA-TCAGGGACGTCTCACCGTGATGATAAGCAGAATGTTCGGCGACAGAT 28376 Query 60320 CCACTGAATTGTGCGACTTTAATTTCG 60346 || ||||| |||||||| | |||| Sbjct 28375 CCCGCCAATTGCGCGACTTTCACTTCG 28349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471730421023951