Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4008 104 7e-17
seq4059 102 2e-16
seq4421 100 8e-16
>seq4008
Length=1725869
Score = 104 bits (114), Expect = 7e-17
Identities = 169/242 (70%), Gaps = 6/242 (2%)
Strand=Plus/Minus
Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149
||||| ||||| ||||| || || ||||||| || || ||||||||| |
Sbjct 1580360 AATAAATCTCTAACACGCCGGGCACCCTGACCAACGAGGATCTCATCAAATTCAGGGCCT 1580301
Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209
| ||| || | ||||| |||| ||||| || || ||||| | ||| | | ||||||
Sbjct 1580300 GCTACATGGAAGAATGGTACACCGGCTTCTCCAGCAACTGCACGCGCTAACAATGTCTTT 1580241
Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA---GCAGAC 289266
|| ||||| || || || | || | |||||||| || | |||| | ||| || ||
Sbjct 1580240 CCCGTTCCTGGCGGACCGACCAACAATACTCCCTTCGGCAATTTTCCACCAAGGGCGGA- 1580182
Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326
| |||| ||||| |||||||||||||||| | | | ||| || | ||||||||||
Sbjct 1580181 --AAATTTATCAGGATTCTTTAAAAATTCTACTACATTCAGAAGCTCTTGTTTTGCCTCA 1580124
Query 289327 TC 289328
||
Sbjct 1580123 TC 1580122
>seq4059
Length=1225554
Score = 102 bits (112), Expect = 2e-16
Identities = 174/247 (70%), Gaps = 8/247 (3%)
Strand=Plus/Minus
Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633
||||||| ||| || |||||||||||||| |||||||| || ||| ||||| || ||
Sbjct 1021913 TTCCATAGCCTTTATCAAACGACGCTGAATGTAACCAGTCTCAGCTGTCTTTACGGCGGT 1021854
Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCC 302692
||| || ||||| ||||||| ||||| || || ||| | | ||| | || ||| || |
Sbjct 1021853 ATCGATAAGACCTTCACGACCGCCCATTGCGTGAAAGTAGAACTC-TGAGGGCGTGAGAC 1021795
Query 302693 CCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGG 302749
| | | | | || |||| || |||||||| | ||| || || |||| || |||
Sbjct 1021794 CAGCGAGATATGAATTCTCGACAAAACCACGGGACTCTGGTCCGTAATCATC---CTTAA 1021738
Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809
| || |||||||| || || || | || | || || || || || ||||| || |
Sbjct 1021737 TGAAATGTGGCAGTGTTCTCTTACGGAAACCAAAGGGTATCCGTTTACCTTCAACATTTT 1021678
Query 302810 GCTGTCC 302816
|||| ||
Sbjct 1021677 GCTGGCC 1021671
Score = 86.0 bits (94), Expect = 2e-11
Identities = 119/164 (73%), Gaps = 11/164 (7%)
Strand=Plus/Minus
Query 303637 TGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTCCGCA-ACGTT 303695
||||||||||| ||||| |||||||| |||||||| || ||| ||| | || | ||
Sbjct 1020817 TGTAAATTCATTTCATCCCCGTCAAAGTCAGCATTGTATGGCGAAGTG-CAGCTTAAATT 1020759
Query 303696 CATCCGGAAAGTATCACCCTGCATCA---TAACACGGGCTTTATGACACATCATAGACAT 303752
||| ||||| || | | | | || ||||||| ||||| ||||||| |||
Sbjct 1020758 CATGCGGAATGTGCTCCACGGAAGCACCTTAACACG------ATGACCCATCATACTCAT 1020705
Query 303753 TCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTCACCGT 303796
|||||||||| |||||||||||||| | ||| | || ||||
Sbjct 1020704 CTTGTGTAGAGTAGGCTGACGATTGAAGATTACGAGATCGCCGT 1020661
>seq4421
Length=1573124
Score = 100 bits (110), Expect = 8e-16
Identities = 149/207 (72%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 60143 GTGAAAATATACCTCTCGGAT--GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200
||||||||||| ||||||| || | ||||| ||||| ||| | || || ||||
Sbjct 28552 GTGAAAATATA--TCTCGGACTGGCGGAATCCTTTCCACCAGAAAGTCTTGTACCGAATT 28495
Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260
| ||| | ||||| | |||||||||||||| || |||||||| || |||||| ||
Sbjct 28494 GACCGATGGGCTGTAGCAGATTAATGTTGTTGCTACCCACGAAATTCTGTGCGAGATTAA 28435
Query 60261 CAATAG-CACCATTTAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTGAAACATAT 60319
| || | | ||| | | | |||||||||||||| |||||||||| | ||| ||
Sbjct 28434 CTATGGTCGCCA-TCAGGGACGTCTCACCGTGATGATAAGCAGAATGTTCGGCGACAGAT 28376
Query 60320 CCACTGAATTGTGCGACTTTAATTTCG 60346
|| ||||| |||||||| | ||||
Sbjct 28375 CCCGCCAATTGCGCGACTTTCACTTCG 28349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471730421023951
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |