Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3537 235 5e-57 seq4552 107 2e-18 seq3876 89.7 4e-13 >seq3537 Length=3457499 Score = 235 bits (260), Expect = 5e-57 Identities = 327/456 (72%), Gaps = 4/456 (1%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| || ||||||| ||| | ||||| | ||| || | | || ||| |||| Sbjct 3056485 CGGTGGATTTTTCAAGATGTACGTGTTCAACTTGTGATTGCTCTCAAGAAGGCCATGATG 3056426 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGAC--ACGATGAGCTCA 34320 || || |||||||| ||||| |||| |||| ||| || || || || | || Sbjct 3056425 TCCACACGCTTTGCAACCCTGCGAGATC--GTTCCTTTCTTCGAACTGACCATTAATTCG 3056368 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 || ||||| ||||| || | || || | ||| | || ||||| |||||||| | ||| Sbjct 3056367 GTTTCCGGATTGTCGCAGGCTGGGCAAAGAACATATTTTCGGATAAAACCATCCAACAGA 3056308 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||||| ||| | ||||| || |||||||| ||||| |||||||| ||| | || Sbjct 3056307 TCCTGTAGCTTTGTCGCATCGTGTGAACCGTTGACAATGAAGCGTTCGTTCTTGAAGTCA 3056248 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | ||||||||| ||||||| |||||| || || ||||| ||||| || | |||||||| Sbjct 3056247 AACTGCGTTTGAGCGCCCAACTCGCAACCAAAATACTTGGTCGGATACGTAGCCGGACGA 3056188 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 || | |||||| || | || |||||||||||| || ||||| || || || ||||| Sbjct 3056187 CCGATCGCCTTCGCCACATCCACCATGTTGACGATCACTGTCTTAATACCATTTCCCTTG 3056128 Query 34561 CCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTG 34620 ||||| ||||| || ||| |||||||| || || || || || || || |||||| Sbjct 3056127 CCTTCCACCTTCGCTTGGATCCGCGGCATCTTATAACGATAAAAAGCATCGCTGACATTG 3056068 Query 34621 CGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || || ||||| || ||||||| ||| | | |||| Sbjct 3056067 CGATTGACGTTTACGCTCCCCATGGTGACCGATGTT 3056032 >seq4552 Length=86203 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| || || |||||| | ||||| |||||||||||| ||||| || ||| | Sbjct 4015 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 4074 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || | | | ||||| || || |||||||| || | || ||||| Sbjct 4075 A-GACACCATTGAAAACGTAAAGGCTAAAATCCAGGACAAAGAGGGAATTCCACCGGATC 4133 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | || || | || |||||||| ||||| |||| |||||| | | || |||| Sbjct 4134 AACAGCGTCTGATCTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 4193 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| ||||||||||| || | ||| |||| | | || ||||| |||| Sbjct 4194 ACATCCAAAAAGAATCCACACTTCACTTGGTTCTGCGTCTTCGAGGAGGAA 4244 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||| || ||| | || || |||||||| ||| ||||| || ||| | | Sbjct 3332 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCA 3391 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | || ||| || || |||||||| || | ||| |||||| Sbjct 3392 -GACACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAAGAGGGAATTCCCCCGGATCA 3450 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| ||| || ||||| || || |||| |||||| | | ||||| || Sbjct 3451 GCAGCGTCTGATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTCTCTGATTATAA 3510 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||||||||||| || | || |||| | | || ||||| |||| Sbjct 3511 TATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGAA 3560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTG 110330 ||||||||| ||||| |||||| | || || |||||||| || | ||| || ||| | Sbjct 4243 AATGCAAATTTTTGTGAAAACTCTCACAGGTAAAACCATCACTCTTGAAGTCGAAGCTTC 4302 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || ||| | | | || || || ||| ||||||||||| | || |||| Sbjct 4303 A-GACACTATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCAGATC 4361 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 |||| | | || | || || || || ||||| || | |||||| | | ||||||| Sbjct 4362 AACAGCGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 4421 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||| |||||||||||||| | ||| | || ||| |||| || || || Sbjct 4422 ACATCCAAAAAGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 4470 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 110264 AGATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACG 110323 ||||| | |||||||| ||||| ||||| | || || |||||||| ||| | || | Sbjct 3095 AGATTCATCATGCAAATCTTTGTAAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTG 3154 Query 110324 GAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCC 110383 || || || ||| | | | || ||| ||||| ||||||||||| | || Sbjct 3155 GAAGCTTCTGACACTATAGAGAACGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCT 3214 Query 110384 GTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCG 110443 ||||| ||| | | || | ||| || || || || ||||||| |||||| | | Sbjct 3215 CCAGATCAGCAACGTTTAATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACCCTTTCC 3274 Query 110444 GATTACAACATTCAAAAAGAATCTAC 110469 ||||||||||| || || |||||||| Sbjct 3275 GATTACAACATCCAGAAGGAATCTAC 3300 >seq3876 Length=890137 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || ||||| || ||||| || | ||| ||| | Sbjct 521060 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACGTTGGAAGTTGAGGCATCT 521001 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 521000 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 520941 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| || |||||||| || |||| | | ||| | | || ||||| Sbjct 520940 CAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 520881 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || ||||| || |||| |||| Sbjct 520880 ATTCAGAAGGAATCCACACTGCATTTGGT 520852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || ||||| |||||||| || | ||| ||| | Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521229 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || ||| ||||||||||| | || ||||| Sbjct 521228 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521169 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || || |||||||| || |||| | | || | | || |||||| Sbjct 521168 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521109 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||| || |||| |||| Sbjct 521108 ATTCAAAAAGAATCCACACTGCATTTGGT 521080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||||||||| | || || |||||||| || | ||| ||| | Sbjct 521517 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAAACCATCACGTTGGAAGTCGAGGCATC 521458 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| || ||| ||||||||||| | || ||||| Sbjct 521457 TGACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 521398 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | |||| || || |||||||| || |||| | | || | | || ||||| Sbjct 521397 GCAGAGATTGATTTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAA 521338 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||||||| || |||| |||| Sbjct 521337 CATTCAAAAAGAATCCACACTGCATTTGGT 521308 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | || || ||||| || || | || ||| || Sbjct 519920 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 519861 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| ||| ||| || ||||||||| | || |||||| Sbjct 519860 GACACGATCGAAAACGTGAAAGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 519801 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||||| |||| ||||| || ||||| ||||||| | || | | || || || Sbjct 519800 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 519741 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 ||||| ||||| ||||| | ||| | || | |||| |||| ||| Sbjct 519740 ATTCAGAAAGAGTCTACACTTCACCTTGTACTTCGACTTAGAGGCGGA 519693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412818339343139