Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3876 91.5 1e-13 seq4552 86.0 5e-12 >seq3876 Length=890137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||||||||| | ||||| |||||||| || | ||| ||||| Sbjct 521517 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAAACCATCACGTTGGAAGTCGAGGCATC 521458 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| ||| ||| || |||||||| | || ||||| Sbjct 521457 TGACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 521398 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | |||| || || |||||||| || || | | || | | |||||||| Sbjct 521397 GCAGAGATTGATTTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAA 521338 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| || || || |||| |||| Sbjct 521337 CATTCAAAAAGAATCCACACTGCATTTGGT 521308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| |||||||| || || || || ||||| || | ||| ||||| Sbjct 521060 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACGTTGGAAGTTGAGGCATCT 521001 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||| ||| || |||||||| | || ||||||| Sbjct 521000 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 520941 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| || |||||||| || || | | ||| | | |||||||| Sbjct 520940 CAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 520881 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| ||||| || || |||| |||| Sbjct 520880 ATTCAGAAGGAATCCACACTGCATTTGGT 520852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| |||||||| || || || |||||||| || | ||| ||||| Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521229 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| ||| ||| || |||||||| | || |||||| Sbjct 521228 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521169 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | || || |||||||| || || | | || | | ||||||||| Sbjct 521168 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521109 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||| || || || |||| |||| Sbjct 521108 ATTCAAAAAGAATCCACACTGCATTTGGT 521080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| ||| | || || ||||| || || | || |||||| Sbjct 520148 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 520089 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || || ||| |||||||||||| | || |||||| Sbjct 520088 GACACGATCGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAG 520029 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || |||||||| || |||| | || | | || || ||| Sbjct 520028 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAAC 519969 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||| ||||| ||||| |||| |||| ||||| Sbjct 519968 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAG 519934 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||||||||| ||||| || |||||||| || ||||| || | ||| ||||| Sbjct 520377 AATGCAAATTTTCGTCAAGACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 520318 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || ||| || ||| || || ||||| | || ||||| Sbjct 520317 GGACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 520258 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||||| || |||| | || | | || || || Sbjct 520257 GCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAA 520198 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 |||||| ||||| ||||| |||| | || ||||| Sbjct 520197 CATTCAGAAGGAATCTACCCTGCATTTAGTTTTGAG 520162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| |||||||| || || || || ||||| || | ||| ||||| Sbjct 520832 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACATTGGAAGTTGAGGCATCT 520773 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||| ||| || || ||||| | || ||| ||| Sbjct 520772 GACACGATTGAGAACGTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCTCCGGACCAG 520713 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || || |||||||| || || | | || | | ||||||||| Sbjct 520712 CAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGTACCCTTTCTGACTACAAC 520653 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAG 107770 ||||||||||| || || ||||| |||| || || Sbjct 520652 ATTCAAAAGGAATCCACATTGCATTTGGTTTTAAG 520618 >seq4552 Length=86203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| || || |||||| | || || |||||||||||| ||||| || ||| Sbjct 4015 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 4074 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | ||||| || || || ||||| || | || |||||| Sbjct 4075 AGACACCATTGAAAACGTAAAGGCTAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 4134 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || || | || |||||||| ||||| || | || ||| | | |||||||| Sbjct 4135 ACAGCGTCTGATCTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 4194 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| ||||| || || || | ||| |||| || | | ||||| |||| Sbjct 4195 CATCCAAAAAGAATCCACACTTCACTTGGTTCTGCGTCTTCGAGGAGGAA 4244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398854326159247