Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq4552 172 4e-38
seq3876 168 5e-37
seq4069 95.1 9e-15
>seq4552
Length=86203
Score = 172 bits (190), Expect = 4e-38
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | |||||| |||| |||||| ||||||||||||||||| |||||||| |
Sbjct 3559 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGA 3500
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | ||| || ||||||||||||||| | |||| | ||||||||||| ||
Sbjct 3499 GAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGG 3440
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| |||||||||||||| | ||| ||| ||| |||| | |||||| ||| ||| ||
Sbjct 3439 AATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGAC 3380
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || || ||||| || || | || || ||||| ||||||||
Sbjct 3379 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332
Score = 158 bits (174), Expect = 9e-34
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| | | |||||| || | |||||| || ||||| || || ||||| ||||| | |
Sbjct 3330 CCTCCACGAAGACGCAGAACAAGATGAAGTGTAGATTCCTTCTGGATGTTGTAATCGGAA 3271
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| | ||| || ||||| || |||||| | || || | ||||||||| || |||
Sbjct 3270 AGGGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATTAAACGTTGCTGATCTGGAGGA 3211
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
||||| ||||||||||| | || |||||| | |||| |||||||||| ||| ||
Sbjct 3210 ATACCTTCTTTGTCTTGGATCTTAGCTTTGACGTTCTCTATAGTGTCAGAAGCTTCCACC 3151
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || ||||| ||||| | |||||| ||||| || |||||
Sbjct 3150 TCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTTACAAAGATTTGCAT 3104
Score = 138 bits (152), Expect = 9e-28
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | |||||| |||| |||||| || |||||||| || |||||||| || |
Sbjct 4015 TCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGA 3956
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | | || || | ||||| ||||| | ||||| | |||||| || || ||
Sbjct 3955 GAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGG 3896
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| || ||||||||||| | ||| ||| || |||||| |||||||| ||| ||
Sbjct 3895 AATGCCTTCTTTGTCTTGGATTTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3836
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||||||||| || ||||| || || | ||||| || || || ||||||
Sbjct 3835 TTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3787
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | |||||| |||| |||||| || |||||||| || |||||||| || |
Sbjct 3787 TCCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGA 3728
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | | || || | ||||| ||||| | ||||| | |||||| || || ||
Sbjct 3727 GAGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGG 3668
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| || ||||||||||| | || ||| || |||||| |||||||| ||| ||
Sbjct 3667 AATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3608
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|||||| || || ||||| || || | ||||| || || || ||||||
Sbjct 3607 TTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3559
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| | | |||||| ||||| ||||| |||||||||||||| ||||| || || |
Sbjct 4243 TCCTCCTCGAAGACGCAGAACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGGA 4184
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
|| || | ||| || |||||||| || || | |||| | || |||||||| ||
Sbjct 4183 AAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTGG 4124
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||| ||||||||||| || | ||| || || |||| | ||||| ||| ||| ||
Sbjct 4123 AATTCCCTCTTTGTCCTGGATTTTAGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGAC 4064
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||| || || || ||||| || || | ||||| || || || ||||||
Sbjct 4063 TTCGAGGGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 4015
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|| || || || || ||||||||||| ||||| ||||| | || || | || ||
Sbjct 4452 ACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCGTCTTCC 4393
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
||||| |||||||| | || || | || ||||| || || || || |||||||| ||
Sbjct 4392 AGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTCTTTGTCCTG- 4334
Query 29698 AATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | || || |||| | |||||| ||| ||| ||||||||||| || |||||
Sbjct 4333 AATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAGAGTGATGGTTTT 4274
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || | ||||| ||||| || ||||||
Sbjct 4273 ACCTGTGAGAGTTTTCACAAAAATTTGCATT 4243
>seq3876
Length=890137
Score = 168 bits (186), Expect = 5e-37
Identities = 171/220 (78%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628
||||| || |||||||| || |||||||||||||||||||| || || | || |||||
Sbjct 521299 AAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGG 521358
Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
||| || || ||||| || || | |||||||| |||||||| || || || || |||
Sbjct 521359 CCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGGATTCCTTCT 521418
Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747
|||||||| |||||||| ||||||| |||| | |||||||| || ||||| | ||
Sbjct 521419 TTGTCTTG-AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGT 521477
Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| || || | |||||| ||||| |||||||||
Sbjct 521478 GATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 521517
Score = 158 bits (174), Expect = 9e-34
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628
||||| || |||||||| || |||||||| || ||||| || || || | || |||||
Sbjct 520843 AAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTGCGG 520902
Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
||| || || ||||| |||||| | |||||||||||||||||||| || || || |||
Sbjct 520903 CCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGGGATTCCTTCT 520962
Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747
|||||||| |||||||| ||||||| |||| | |||||||| || ||||| | ||
Sbjct 520963 TTGTCTTG-AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCAACTTCCAACGT 521021
Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || ||||| || || || |||||
Sbjct 521022 GATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521060
Score = 158 bits (174), Expect = 9e-34
Identities = 168/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628
||||| || |||||||| || |||||||||||||||||||| || || | || |||||
Sbjct 521071 AAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGG 521130
Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
||| || || ||||| || || | |||||||| |||||||| || || || || |||
Sbjct 521131 CCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCT 521190
Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747
|||||||| |||||||| ||||||| |||| | |||||||| || ||||| | ||
Sbjct 521191 TTGTCTTG-AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGT 521249
Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| ||||| || || || ||||| || || || |||||
Sbjct 521250 GATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 521288
Score = 132 bits (146), Expect = 4e-26
Identities = 157/210 (75%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| || || ||||| || |||||||||||||| | || || || || |||
Sbjct 519940 ACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCG 519999
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|| ||||| || ||| | ||||| || |||||||| || ||||| || ||||| |||||
Sbjct 520000 AGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCTTG- 520058
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | || || |||| | ||||| ||| || || || || || ||||||||
Sbjct 520059 AATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTT 520118
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| | || || ||||| ||||||||
Sbjct 520119 ACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628
||||| || |||||||| | || ||||| || |||||||||||||| | || ||||||
Sbjct 520387 AAACGAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAAAGTGTGCGA 520446
Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688
|| || || ||||| || || | ||||| || ||||| ||||| || || || ||
Sbjct 520447 CCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCTTCC 520506
Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747
||||| || |||||||| ||| || | || | ||||| || ||| ||||| |||||
Sbjct 520507 TTGTCCTG-AATTTTTGCTTTCACGTTCTCAATCGTGTCCGACGCTTCGACTTCCAGAGT 520565
Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || | ||||| ||||| || |||||
Sbjct 520566 GATTGTCTTACCGGTGAGCGTTTTGACAAAAATTTGCAT 520604
Score = 116 bits (128), Expect = 3e-21
Identities = 154/211 (73%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|| ||||| || || ||||| || |||||||||||||| | || || || || |||
Sbjct 520168 ACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCG 520227
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|| ||||| || ||| | ||||| || |||||||| || || || || || ||||||||
Sbjct 520228 AGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTG- 520286
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | ||||||| | || | ||||| || || ||||| | || || || ||
Sbjct 520287 AATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTT 520346
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| ||||| || || || || || ||||||
Sbjct 520347 TCCTGTTAATGTCTTGACGAAAATTTGCATT 520377
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| | |||||||| ||||||||||| || || | || ||| || ||| ||
Sbjct 520624 ACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCCATCTTCA 520683
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
|| ||||| || || | ||||| || ||||| ||||| || || || || ||||| ||
Sbjct 520684 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTCCTG- 520742
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||||| ||| || | || | |||||||| || ||||| | || || || ||
Sbjct 520743 AATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGATGGTCTT 520802
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || ||||| || || || |||||
Sbjct 520803 TCCGGTCAATGTTTTGACGAAAATTTGCAT 520832
>seq4069
Length=1127261
Score = 95.1 bits (104), Expect = 9e-15
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 29597 CTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATA 29656
||||||| || |||||||| | | ||||| ||| || ||||||||||| || | |
Sbjct 161737 CTTTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGA 161678
Query 29657 TCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTT 29716
| | || || ||||| |||||||| ||||| ||||| || | || |||||| | |
Sbjct 161677 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 161618
Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776
| | || || || ||||| || || || || ||||| || || | |||||| || |
Sbjct 161617 CGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 161558
Query 29777 ATATCTGCAT 29786
| ||||||||
Sbjct 161557 AGATCTGCAT 161548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385197495666843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |