Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3918 237 1e-56 seq3812 208 6e-48 seq4300 118 8e-21 >seq3918 Length=5396348 Score = 237 bits (262), Expect = 1e-56 Identities = 689/1047 (66%), Gaps = 18/1047 (2%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 |||||||||| || | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 2215043 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGTACACCTCTAGGCGCCGGAG 2215102 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || | ||||||||||| || | || || | Sbjct 2215103 GAATACCCGTCAGCTCAAATTTGCCGAGGATGTTATTATCTTTCGTCATCGCTCTCTCTC 2215162 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 ||||| | | |||||| ||| | | |||||| || || || || || || ||||| Sbjct 2215163 CCTCGTAGACCTGGATAAGCACTCCCGGTTGATTGTCGGAGTACGTGGTGAACG-TCTGG 2215221 Query 281622 ATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || | || || || ||||| || | || | | ||||||| || ||||| Sbjct 2215222 GTCTGTTTCGTTGGTATCGTCGTGTTCCTTTTGATCAAGGTAGTCATAACGCCGCCAGCG 2215281 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | ||||| || || | || | | || ||||| || ||| Sbjct 2215282 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGAACTTCCTCA 2215341 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | || ||||| || || |||| || ||||| || |||||||| || || Sbjct 2215342 GACTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCGTAAGCAACAGCCTCGTCC 2215401 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCTTAC 281859 ||||| | | || || |||| || || || || |||| ||||| || || | | Sbjct 2215402 GGATTGATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTTCTGA-AT 2215460 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 || || || | | || || || ||||| || || || || || | |||||||| Sbjct 2215461 TTTTGGTATCCTGGTGGAGCCACCGACTAAAACGATGCTGTGAACTTGAGCTTTATCCAT 2215520 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 || | ||| | | || || || ||||| ||| |||||||| || | || Sbjct 2215521 CTTCGCATCTCTAAGCGCCTTCTCCACTGGTTCCAGAGTGCTTCTAAACAGATCGGCGCA 2215580 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAA 282037 || || ||||| | |||||||| || ||| | || || ||||| || || ||||| Sbjct 2215581 GAGCTCCTCGAACCTGGCTCTAGT--GACCGACGTATAGAAGTCAATCCCCTCAAACAAT 2215638 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 ||||| | ||||| | | || ||||| || | | | || || | || || Sbjct 2215639 GAATCGATCTCAATGCTCGCCTGCGTCGACGAGCTCAACGTTCTCTTCGCTCTCTCGCAA 2215698 Query 282098 GCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTGTTTTATATTTTC 282155 || ||||| || | || | | || ||| || | | ||| |||| | || ||||| | Sbjct 2215699 GCAGTCCTCAGACGTCTCAGAGATCTCTTGTTGCT--ACTCAGATCTTTCTTGTATTTCC 2215756 Query 282156 TCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 | ||||| |||| ||| | | || | || || ||||| || || || || | | Sbjct 2215757 TTTTGAATTCTTGCACAAAGTGATTCACCATTCGGTTGTCAAAGTCCTCGCCACCGAGAT 2215816 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 || | || | ||| | | | || | ||| | ||||| |||| | ||||| | | Sbjct 2215817 GCGTGTCGCCGGCCGTGGATTTCACCTCGAAGATACCATCCTCAATCGTCAAAATCGACA 2215876 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT--GGTT 282333 | ||| ||| |||||||||| ||||||||||| |||||| |||| | || | || Sbjct 2215877 CGTCAAAGGTACCACCACCCAAGTCAAAAATAAGAACATTCTTTTC---GCCTGCAGCTT 2215933 Query 282334 T-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | ||||| ||||||||||| | || || || || || || || || ||||| | ||| | Sbjct 2215934 TCTTATCGAGACCATACGCTATCGCGGCGGCTGTAGGCTCGTTTATTATTCTGAGAACGT 2215993 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | || |||||||| || ||||| || || ||||| || || || || || ||||| | Sbjct 2215994 TCAGGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGCCTCTGAGAGTCATTGAAATAAG 2216053 Query 282453 CAGGAACAGTAATAACGGCATCTGTTA 282479 | || ||||| || ||||||| ||||| Sbjct 2216054 CCGGCACAGTGATGACGGCATTTGTTA 2216080 >seq3812 Length=143806 Score = 208 bits (230), Expect = 6e-48 Identities = 716/1102 (65%), Gaps = 22/1102 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| ||||| || || || |||| || || || || |||| | ||||| || Sbjct 22896 TTAGTGATAGTGATCTTGTTCTCTTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAGG 22837 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 ||||| || ||||| | || || || || ||||| ||||| || || | | || ||| Sbjct 22836 ATACCGTTCGCATCGATGTCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGGT 22777 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 ||||| || | | ||| | ||||| ||| |||||||| || | || ||| Sbjct 22776 GGGATACCACTAAGCTCGAATTTGCCCAGTAGATTGTTATCTTTGGTCATGGCGCGCTCA 22717 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 |||||| | | || || || ||| |||||| || | |||||||||||| |||| Sbjct 22716 CCCTCGTAGACCTGAATCAACACACCAGGTTGATTGTCGGCATAAGTTGTAAA-GGTCTG 22658 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | || || || ||||| || || | ||| | |||||| | ||| || || Sbjct 22657 AGTCTGCTTTGTCGGGATGGTTGTATTCCTCTTAATGAGCGCGGTCATGACACCGCCGGC 22598 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | ||| ||||| || |||||||| |||| ||| | | | ||| | || Sbjct 22597 AGTCTCAATACCCAGAGAGAGCGGAGTGACGTCAAGTAGAAGCAAGTCTTGCA---CCTC 22541 Query 281740 ATCAGTTTGACCA----ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTT 281795 || | || | || |||| ||||| || || | || || |||||||| ||||||| Sbjct 22540 CTCGGATTTATCACCGTGCAAG-ATAGCCGCCTGTACTGCTGCGCCATATGCCACAGCTT 22482 Query 281796 CATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGT 281854 |||||||||| | || || || || | ||| ||||||||||| | || | || || | Sbjct 22481 CATCAGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCCTGTAGGAGCTTCT 22422 Query 281855 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 | ||| || || || | || ||||| ||||| || || || || | || | ||| Sbjct 22421 -GAATCTTGGGGATTCGTGTAGAGCCTCCGACTAAGACGATATCGTGGATTTGAGCTTTG 22363 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 |||| || | || | || || |||||||||||| | | | || | || Sbjct 22362 TCCATCTTGGCGTCGCGCAGCGACTTCTCGACGGGTTCAAGAGTACCGCGGAAGAGATCC 22303 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAAC 282034 | || ||||| ||||| ||||| || | || | | |||| ||||| ||| || Sbjct 22302 GCGCAGAGTTCCTCGAAACGAGCTCGGGTGATAGAGGTGTAGAAATCGATTCCCTCGTAC 22243 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 || ||||| | || || | | ||||| || || || || | || || |||||||| Sbjct 22242 AACGAATCGATCTCGATGCTGGCCTGAGTGGAGGATGACAGGGTGCGCTTTGCACGTTCG 22183 Query 282095 CATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTGCT-GATTGATTCAAATCTGTTTTATAT 282151 || || || | ||| | || | || || ||| | || | ||||||| | || ||| Sbjct 22182 CAGGCCGTGCGTAGACGACGAAGAGCGCGTTTATTCGA---AGTCAAATCCTTCTTGTAT 22126 Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || | |||||| |||| ||| | | || | || ||||| || || ||||| ||| Sbjct 22125 TTGCGCTTGAATTCTTGCACAAAGTGATTGACCATGCGGTTATCGAAGTCCTCACCACCC 22066 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | ||||| ||| | ||| | | || | ||| | |||||||| | || | | Sbjct 22065 AGATGAGTATCTCCAGCCGTGGACTTGACCTCGAAGATACCATCTTCTATAGTTAGGATG 22006 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | || || || |||||||| | |||||| ||||| || || | || ||| Sbjct 22005 GACACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTT--TCGCTCGCCGGTGG 21948 Query 282332 --TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 282389 || || || ||||| || |||| || || || || || || || ||||| | ||| | Sbjct 21947 CCTTCTTGTCGAGACCGTATGCAATCGCGGCGGCGGTGGGCTCGTTGATAATACGCAATA 21888 Query 282390 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 282449 | || | ||| | || | || || || || || || || | || || ||||| || | Sbjct 21887 CGTTCAAACCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGT 21828 Query 282450 ATGCAGGAACAGTAATAACGGC 282471 | || || || || || || || Sbjct 21827 AAGCGGGGACGGTGATCACAGC 21806 >seq4300 Length=3477374 Score = 118 bits (130), Expect = 8e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | || || |||| ||||| ||||||||||||||||| | Sbjct 1327236 TTTATCTTCTTGTTTATCCATTCCGTAAGCAAGTGCAGCTGCAGTTGGTTCATTAATTAC 1327295 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | ||| || | |||||||| || |||||||| || ||||||| ||||||||| Sbjct 1327296 ACGAAGAACGTTCAATCCAGCAATCTGACCAGCATCTTTTGTTGCTTGTCGTTGTGAATC 1327355 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||||| || || ||||||||||| |||| ||||| Sbjct 1327356 ATTAAAATACGCTGGTACAGTAATAACAGCATTCTTTACT 1327395 Score = 116 bits (128), Expect = 3e-20 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 ||||| ||||| || |||||||||||||||||||||| |||||| | || || ||| Sbjct 1327258 CCGTAAGCAAGTGCAGCTGCAGTTGGTTCATTAATTACACGAAGAACGTTCAATCCAGCA 1327317 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| |||| ||||||||||| |||||||||||| Sbjct 1327318 ATCTGACCAGCATCTTTTGTTGCTTGTCGTTGTGAATCATTAAAATACGCTGGTACAGTA 1327377 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 1327378 ATAACAGCATTCTT 1327391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740403430236798