Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq3876 104 2e-17
>seq3876
Length=890137
Score = 104 bits (114), Expect = 2e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||| || || ||| | || | || ||||||||| |||||||| |||||||||
Sbjct 520678 TCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTG 520737
Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||| |||||| || | | ||||| |||||| | | ||| || || | ||||
Sbjct 520738 TC-CTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGAT 520796
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
||| || ||||||| ||||| |||||||| |||||
Sbjct 520797 GGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832
Score = 104 bits (114), Expect = 2e-17
Identities = 149/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||| | ||||| || ||||| |||||||||||| | || ||| ||| || |
Sbjct 521539 AAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGATAAGGT--ACGTCCGTCTTCAA 521596
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
||||||| || ||| | || | |||||||| ||||| ||||| |||||||| || ||
Sbjct 521597 GCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGGATACCTTCCTTATCTTGGA 521656
Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
||||| || | | ||| | ||||| | | || || || | ||| | ||| || |
Sbjct 521657 TCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAACTTCAAGGGTTATGGTCTTCC 521716
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||||| || || ||||||||||||||
Sbjct 521717 CGGTCAATGTCTTCACGAAAATCTGCAT 521744
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||||||||| ||||| || ||| | || | | | ||||| |||||||||||
Sbjct 519724 GTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCA-TCCTCTAGCTGCTTGCC 519782
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581
|||| |||| || | || || |||||||| |||||||| || || ||| ||| || |
Sbjct 519783 CGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATC-CTGAATTTTCGCTT 519841
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | |||||| | | ||| || || | |||| ||||| || || ||||
Sbjct 519842 TCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTACCAGTGAGAG 519901
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || |||||||||||
Sbjct 519902 TCTTGACAAAAATCTGCAT 519920
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/208 (71%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513
||||| | || || || ||||| || || ||||| | ||| ||| ||| || ||
Sbjct 520399 AAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAAAGTGTGCGACC-GTCTTCAAG 520457
Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573
||| || || ||| | || | || ||||||||| || ||||| ||||||||||| |||
Sbjct 520458 CTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTC-CTGAA 520516
Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632
|||||| || | | ||||| |||||| | | || || || | |||| || || |
Sbjct 520517 TTTTTGCTTTCACGTTCTCAATCGTGTCCGACGCTTCGACTTCCAGAGTGATTGTCTTAC 520576
Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || ||||| || ||||| |||||
Sbjct 520577 CGGTGAGCGTTTTGACAAAAATTTGCAT 520604
Score = 89.7 bits (98), Expect = 5e-13
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||| | ||| || || ||||| || || ||||| | ||| ||| ||| ||||
Sbjct 520171 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGT--ACGGCCGTCTTCGA 520228
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||| || || || | || | || |||||| || |||||||| ||||||||||| |||
Sbjct 520229 GCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTC-TTGA 520287
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || |||| | ||| | |||||| | | ||| || || | |||| ||| ||
Sbjct 520288 ATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTT 520347
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || | || || |||||||| |||||
Sbjct 520348 CCTGTTAATGTCTTGACGAAAATTTGCAT 520376
Score = 86.0 bits (94), Expect = 6e-12
Identities = 147/209 (70%), Gaps = 6/209 (3%)
Strand=Plus/Plus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512
||||| | ||| || || ||||| || || ||||| | ||| ||| ||| ||||
Sbjct 519943 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGT--ACGGCCGTCTTCGA 520000
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||| || || || | || | || |||||| |||||||| |||||||| || || |||
Sbjct 520001 GCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCT-TGA 520059
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || || | | || | |||||| | | ||| || || | |||| |||||
Sbjct 520060 ATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTA 520119
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| || || |||||||||||
Sbjct 520120 CCAGTGAGAGTCTTGACAAAAATCTGCAT 520148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483392864320520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |