Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3876 104 2e-17 >seq3876 Length=890137 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || ||| | || | || ||||||||| |||||||| ||||||||| Sbjct 520678 TCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTG 520737 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| |||||| || | | ||||| |||||| | | ||| || || | |||| Sbjct 520738 TC-CTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGAT 520796 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||||| ||||| |||||||| ||||| Sbjct 520797 GGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||||| || ||||| |||||||||||| | || ||| ||| || | Sbjct 521539 AAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGATAAGGT--ACGTCCGTCTTCAA 521596 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || ||| | || | |||||||| ||||| ||||| |||||||| || || Sbjct 521597 GCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGGATACCTTCCTTATCTTGGA 521656 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| || | | ||| | ||||| | | || || || | ||| | ||| || | Sbjct 521657 TCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAACTTCAAGGGTTATGGTCTTCC 521716 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || |||||||||||||| Sbjct 521717 CGGTCAATGTCTTCACGAAAATCTGCAT 521744 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| ||||| || ||| | || | | | ||||| ||||||||||| Sbjct 519724 GTAGACTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCA-TCCTCTAGCTGCTTGCC 519782 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 |||| |||| || | || || |||||||| |||||||| || || ||| ||| || | Sbjct 519783 CGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATC-CTGAATTTTCGCTT 519841 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| ||||| || || |||| Sbjct 519842 TCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTACCAGTGAGAG 519901 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 519902 TCTTGACAAAAATCTGCAT 519920 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || || ||||| | ||| ||| ||| || || Sbjct 520399 AAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAAAGTGTGCGACC-GTCTTCAAG 520457 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | || | || ||||||||| || ||||| ||||||||||| ||| Sbjct 520458 CTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTC-CTGAA 520516 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||| || | | ||||| |||||| | | || || || | |||| || || | Sbjct 520517 TTTTTGCTTTCACGTTCTCAATCGTGTCCGACGCTTCGACTTCCAGAGTGATTGTCTTAC 520576 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || ||||| || ||||| ||||| Sbjct 520577 CGGTGAGCGTTTTGACAAAAATTTGCAT 520604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||| || || ||||| || || ||||| | ||| ||| ||| |||| Sbjct 520171 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGT--ACGGCCGTCTTCGA 520228 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || | || |||||| || |||||||| ||||||||||| ||| Sbjct 520229 GCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTC-TTGA 520287 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || |||| | ||| | |||||| | | ||| || || | |||| ||| || Sbjct 520288 ATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGTCTTT 520347 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || | || || |||||||| ||||| Sbjct 520348 CCTGTTAATGTCTTGACGAAAATTTGCAT 520376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | ||| || || ||||| || || ||||| | ||| ||| ||| |||| Sbjct 519943 AAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGT--ACGGCCGTCTTCGA 520000 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || || | || | || |||||| |||||||| |||||||| || || ||| Sbjct 520001 GCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCT-TGA 520059 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || || | | || | |||||| | | ||| || || | |||| ||||| Sbjct 520060 ATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGTTTTA 520119 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || ||||||||||| Sbjct 520120 CCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483392864320520