Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3876 145 5e-30 seq4552 107 1e-18 seq4069 89.7 3e-13 >seq3876 Length=890137 Score = 145 bits (160), Expect = 5e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| || ||| |||||||| |||||||| || || Sbjct 521289 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGA 521348 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||||||||||| |||||||| | |||||||||| | || Sbjct 521349 AAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGG 521408 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| || || |||| || | ||||| || || | Sbjct 521409 GATTCCTTCTTTGTCTTGAATTTT-TGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA 521467 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | |||||| ||||| ||||| | ||||| |||||||||||||| Sbjct 521468 CTTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| || ||| |||||||| |||||||| || || Sbjct 521061 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGA 521120 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | ||||||||||| || ||||| | |||||||||| | || Sbjct 521121 AAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGG 521180 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| || || |||| || | ||||| || || | Sbjct 521181 GATTCCTTCTTTGTCTTGAATTTT-TGCTTTGACATTTTCGATCGTGTCAGATGCCTCGA 521239 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| ||||| || || || ||||| || || || |||||| Sbjct 521240 CTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 521289 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| || ||| || || || || ||||| || || Sbjct 520833 ACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCTGAATATTGTAGTCAGA 520892 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | |||||||| ||||| ||||| | |||||||| | || Sbjct 520893 AAGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCCGGAGG 520952 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| || || |||| || | ||||| || || | Sbjct 520953 GATTCCTTCTTTGTCTTGAATTTT-TGCTTTGACATTTTCGATCGTGTCAGATGCCTCAA 521011 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | |||||| || || || || || ||||| || || || |||||| Sbjct 521012 CTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 521061 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | |||||||| | ||| || || || ||||| ||||| || Sbjct 520378 CCACCACGTAAACGAAGAACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAA 520437 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| |||| || | ||||||||||| || ||||| | |||||| || | || Sbjct 520438 AGTGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGG 520497 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| || || || | || | ||||| | ||| || Sbjct 520498 ATTCCTTCCTTGTCCTGAATTTT-TGCTTTCACGTTCTCAATCGTGTCCGACGCTTCGAC 520556 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | |||||| ||||| || |||||| Sbjct 520557 TTCCAGAGTGATTGTCTTACCGGTGAGCGTTTTGACAAAAATTTGCATA 520605 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| | | |||||||| |||||| || || || || ||||||||||| Sbjct 521518 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAT 521577 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| |||| || | || ||||| || || ||||||||||||||||| | || Sbjct 521578 AAGGTACGTCCGTCTTCAAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGG 521637 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| || || || || || || |||| || | |||||| | ||| || Sbjct 521638 ATACCTTCCTTATCTTGGATCTT-TGCTTTTACATTCTCGATGGTGTCAGAAGCTTCAAC 521696 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| || || || || || || || || || || || ||||||||||| Sbjct 521697 TTCAAGGGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATAGT 521747 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || |||||||| || || || || || ||||| ||||| || || || || |||| Sbjct 519937 AAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 519996 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||||||||||| ||||| | ||||||||| | || | |||||||| || Sbjct 519997 TCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGAATGCCTTCTTTATCT 520056 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 ||||||| ||| || | || | ||||| | || || || | ||||| || Sbjct 520057 TGAATTTTCGCCTTC-ACGTTTTCGATCGTGTCCGAAGCCTCAACCTCCAGTGTGATAGT 520115 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||| || | || || ||||| ||||||||| Sbjct 520116 TTTACCAGTGAGAGTCTTGACAAAAATCTGCATA 520149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 || || ||||| || || || || || ||||| ||||| || || || || |||| Sbjct 520165 AAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 520224 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 || | |||||||||||||| ||||| | |||||||||| | || | ||||| ||||| Sbjct 520225 TCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCT 520284 Query 33658 GCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | || |||| || | ||||| | || || || | |||||| || Sbjct 520285 TGAATTTT-GGCTTTGACATTCTCGATCGTGTCCGACGCCTCAACTTCCAACGTGATGGT 520343 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||||||| || || || || || ||||| Sbjct 520344 CTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 33537 TAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTC 33596 ||| |||||||| | ||| || ||||| |||||||| || || || || || | || Sbjct 520620 TAAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCCATC 520679 Query 33597 GTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || | ||||||||||| || ||||| | |||||| || | || | ||||| ||||| Sbjct 520680 TTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC 520739 Query 33657 GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCG 33715 |||||| || || || | || | ||||| || || || || | ||||| | Sbjct 520740 CTGAATTTT-TGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGATGG 520798 Query 33716 TTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || ||||| || || || |||||| Sbjct 520799 TCTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 520833 >seq4552 Length=86203 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| ||| || ||| |||||||| || || ||||| ||| Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||| || |||||||||| |||||||||||| | || Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| |||| |||| || | ||||| | ||| || Sbjct 3438 ATTCCCTCTTTGTCTTGGATTTTGGCTTTC-ACATTTTCAATAGTGTCTGAAGCTTCGAC 3380 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || | || || |||||||||||||| Sbjct 3379 TTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332 Score = 107 bits (118), Expect = 1e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || || || || || |||||||| ||||||||||| || || || | || Sbjct 4458 CGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCG 4399 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| ||| || || || || || |||||||| |||||| | || | ||||||||| Sbjct 4398 TCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGGATTCCTTCTTTG 4339 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| ||| || | || | ||||| | ||| || |||| ||||| Sbjct 4338 TCCTGAATTTTGGCCTTC-ACGTTTTCAATAGTGTCTGAAGCTTCGACTTCAAGAGTGAT 4280 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||||||||| | ||||| ||||| || ||||| Sbjct 4279 GGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||||||||| || || | | || || | ||| ||||| ||||| Sbjct 3294 TCCTTCTGGATGTTGTAATCGGAAAGGGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAG 3235 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || ||||| ||||||||| | || | |||||||||||| || || | || || | Sbjct 3234 ATTAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTT-AGCTTTGACGTT 3176 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | |||||| |||| ||||| ||||| || || | |||||||| Sbjct 3175 CTCTATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTCCCAGTGAGGGTTTTTAC 3116 Query 33738 AAAGATCTGCAT 33749 |||||| ||||| Sbjct 3115 AAAGATTTGCAT 3104 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| ||| ||||| ||||| || ||||| || || ||| Sbjct 4014 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3955 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| ||||| ||||| || || || |||||||| ||||| || | || Sbjct 3954 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3895 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| | || || | || | ||||| | ||| || Sbjct 3894 ATGCCTTCTTTGTCTTGGATTTT-AGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3836 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 3835 TTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| ||| ||||| ||||| || ||||| || || ||| Sbjct 3786 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3727 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | |||| ||||| ||||| || || || |||||||| ||||| || | || Sbjct 3726 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3667 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | || || | || | ||||| | ||| || Sbjct 3666 ATGCCTTCTTTGTCTTGGATCTT-AGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3608 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | ||||| || ||||| ||||| Sbjct 3607 TTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 >seq4069 Length=1127261 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || || |||||||| || |||||| | || |||| |||||| ||||| || | Sbjct 161737 CTTTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGA 161678 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 | | ||||| |||||| |||| | || || ||||| || || || | ||| Sbjct 161677 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CATTC 161619 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||| ||| | || || || | ||||| |||||||| || | ||||| || Sbjct 161618 TCGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACG 161559 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 161558 AAGATCTGCAT 161548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328685479892160