Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3537 105 9e-18 seq3783 96.9 5e-15 seq4212 93.3 6e-14 >seq3537 Length=3457499 Score = 105 bits (116), Expect = 9e-18 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| |||||||||| | | ||||| || || || ||||| |||||| | |||| Sbjct 3065567 TTTTCAAATCCTAATGCAACGAATAATCTGTCCGCGACGAATTCGATGTATTTACACATC 3065508 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 ||| |||||||||||||| |||| ||| |||| || | ||| | ||| || ||||| Sbjct 3065507 CATTCGCAATTCATTCCTATCAGTTCAACCGGTAACGCTTGCGTCAAAAATTCCTTTTCA 3065448 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAAT 39598 || |||||||| || ||| || ||| | || |||| | | | ||| || | Sbjct 3065447 ATTTCTACGGCATCCATTACAATTGATTTCACACGCTCA--AAT-GATGGCTTTTGTACG 3065391 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||||||||||| |||||||| || || |||| |||| Sbjct 3065390 ATGTGTTTAAACATTAAACAGGCGAAATCGCAGTGTAATCCCT 3065348 >seq3783 Length=2569584 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| ||||||||| || Sbjct 867820 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATTAAACT 867879 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||| ||||||||||| ||| |||||||| |||| || ||| |||| Sbjct 867880 CCATACATCATCATCAAAAACACGTTTCATGAATAAATTTGGAGTCCA 867927 >seq4212 Length=4365329 Score = 93.3 bits (102), Expect = 6e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 69962 GAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGT 70021 |||| | || ||||| || || | |||| | |||||||||| || || || || | Sbjct 3414560 GAAATTACCTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGAGTCGGTGAAGCAT 3414501 Query 70022 GAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 | || || || ||| || | ||| |||||||| || || || || || | Sbjct 3414500 GTGTAAAATATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTT 3414441 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||||| || || || || | |||||||||||| ||||| | || || | ||| | Sbjct 3414440 CATGAATACCAATAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCGT 3414381 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 | ||||| | |||||| | | || || |||||||| |||| ||| || || |||| Sbjct 3414380 TGATTTTTAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGT 3414321 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTTATC 70235 | | ||||| || ||| |||||| ||||| || Sbjct 3414320 CACGATCGTATATTATAGCAGAATCCAGTTTCTC 3414287 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 |||||||| |||||||||||| | || || ||| |||||| ||||||||| || |||| Sbjct 3415183 AATTCATCACCCCAAACATCAGCTAAGCCGGGAGATTCATATGGACACATTAAGCTCCAC 3415124 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 | || |||| | || |||| |||||| ||||| || ||||| ||| | ||||| Sbjct 3415123 ATCTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGA-CCATAAA 3415069 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 68482 GGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCC 68541 ||||| ||||||| | |||| ||||| ||||| | ||||||||||| ||| ||| Sbjct 3416560 GGATCTCCTATATGGACGTTCAAAGATTGCGACTGATCAACGAAAGCTCCTCGATCAGCC 3416501 Query 68542 GCCATTTTTATAA-TACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT 68600 ||||||| | || |||| ||||| | |||||||| | |||||| ||| || ||| | Sbjct 3416500 GCCATTTCAAGAATTACT-TTTTGCGATATTTCCCAGACCGTCTTATAAAGCTCTTTTAA 3416442 Query 68601 ATCATCTGGAAGGC 68614 |||||| |||| || Sbjct 3416441 ATCATCGGGAATGC 3416428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 68687 TTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAG 68746 ||||| ||| || | ||||||||| || || |||||| || || || || | | Sbjct 3416264 TTAAATCTCGCAGTAAATGCGGATTGACAATGATAAATTCTCCCGACAATACACGCCTCA 3416205 Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 || ||||| || ||||||||||| | |||||| ||||| || | ||| || || || | Sbjct 3416204 CATAGATATTGCTTGTATATGGTTCAATAGATTCGTTATTCCCTAAAATCTGTGCTGTCG 3416145 Query 68807 ATGCAGTTGGCATAGGTGC 68825 | || |||||||||||||| Sbjct 3416144 AGGCCGTTGGCATAGGTGC 3416126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686869105257720