Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3537 96.9 3e-15 seq3174 89.7 4e-13 seq3506 84.2 2e-11 >seq3537 Length=3457499 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||| | ||||| ||| || || || || ||||| || || || || || ||| Sbjct 3064001 GAGAAATACTTTATCTCTCATGTCTTAGCATTCTTTGCCGCTTCTGATGGTATCGTTAAT 3064060 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 |||||| || || | || || || || || | || |||||||| ||||| ||| Sbjct 3064061 GAAAATCTGATTGAGAGATTCAGTCAGGAGGTGAAAATTCCCGAAGCACGTTGTTTCTAT 3064120 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 || ||||||||||||||||||||||||||||| || ||||| Sbjct 3064121 GGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTA 3064161 >seq3174 Length=2070283 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/204 (71%), Gaps = 10/204 (5%) Strand=Plus/Plus Query 41005 GACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTT----GATGGCATTGCCA 41060 ||||||| ||| ||| || ||||| || || | | |||| |||||||||||| Sbjct 328915 GACGTATTATAATGTCAGCCTGGAATCC---GGTTG-ATATTTCAAAGATGGCATTGCCG 328970 Query 41061 CCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTA 41119 || |||||| | || ||| || ||||| || || || ||| |||| || | || Sbjct 328971 CCGTGTCATGT-TTTTGTACAATTTTATGTAAATAACGGAGAATTGTCCACGCAGCTTTA 329029 Query 41120 TCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCT 41179 ||||||| | |||||||| |||| || ||||||||||||||| ||| || |||| Sbjct 329030 TCAAAGAAGCGCAGACATGGGTTTAGGAGTGCCGTTTAACATAGCGTCGTATTCTTTGCT 329089 Query 41180 CACGTATATGATTGCACACGTTAC 41203 || || ||||| || || ||||| Sbjct 329090 GACTTACATGATCGCTCATGTTAC 329113 >seq3506 Length=651687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 || || ||||| || || || ||||| || || ||||| | || ||||| | ||| || Sbjct 176869 GGGGTTCATGATACAGTGGTTAATCAGCTTCTTGCAAAAATTGATGGTGTCGAACAATTG 176810 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||| ||| | |||||||| |||||||||||| || | || ||| || |||||| Sbjct 176809 AATAACATTCTTGTTATTGGTATGACTAATAGAAGAGATATGATCGACGAAGCTTTATTA 176750 Query 19732 CGACCCGGTCGGTTGGAAATAAAG 19755 |||| || | ||||| ||||| Sbjct 176749 AGACCTGGCAGATTGGAGGTAAAG 176726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397433606211115