Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3876 154 9e-33 seq4552 143 2e-29 >seq3876 Length=890137 Score = 154 bits (170), Expect = 9e-33 Identities = 164/211 (78%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | ||| ||||| ||||||||||||||||||||||| || |||||||| Sbjct 520396 ACCAAATGCAAAGTCGATTCCTTCTGAATGTTATAATCTGAAAGTGTGCGACCGTCTTCA 520455 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || || | ||| |||||||| || | ||| |||||||| || Sbjct 520456 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTC-CTG 520514 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||||| ||| ||| | ||| |||| | |||| || ||||||| || || || | Sbjct 520515 AATTTTTGCTTTCACGTTCTCAATCGTGTCCGACGCT-TCGACTTCCAGAGTGATTGTCT 520573 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| | |||||| |||||||| ||||| Sbjct 520574 TACCGGTGAGCGTTTTGACAAAAATTTGCAT 520604 Score = 125 bits (138), Expect = 4e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||||||| | ||| |||||||||||||| || || ||||| || || | ||| Sbjct 520621 AAAACCAAATGCAATGTGGATTCCTTTTGAATGTTGTAGTCAGAAAGGGTACGGCCATCT 520680 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 ||||| ||||| ||||| || || || | ||| |||||||| || | ||| |||||||| Sbjct 520681 TCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGGTCCGGAGGGATTCCTTCCTTGTC- 520739 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| ||| ||| | ||| ||||| ||| ||||||| || || || Sbjct 520740 CTGAATTTTTGCTTTCACGTTCTCAATCGTGTCAGATGCCTCAACTTCCAATGTGATGGT 520799 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || ||||| || ||||| ||||| Sbjct 520800 CTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520832 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| | ||| || ||||| || || ||||| |||||||||||||| ||| Sbjct 520150 CCGCCGCGAAGCCTCAAAACTAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 520209 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || ||||| |||||||| || || | ||| || || || || Sbjct 520210 AGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGAGGG 520269 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGT-CTTCGCTCTCCA 34657 | ||| ||||||||| ||| ||| | ||| || | || |||| | ||| ||| | Sbjct 520270 ATTCCTTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGC-CTCAA 520327 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || ||||| || || || ||||| ||||| Sbjct 520328 CTTCCAACGTGATGGTCTTTCCTGTTAATGTCTTGACGAAAATTTGCAT 520376 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||||||| ||||| ||||| || ||||| || | || || |||||||| Sbjct 521536 ACCAAATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGATAAGGTACGTCCGTCTTCA 521595 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || || || || |||||||| || || || || | || ||||| ||| | Sbjct 521596 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCGGGTGGGATACCTTCCTTATCTTGG 521655 Query 34618 ATCTTTTGTTTTAACGATAAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||| ||||| || ||||| ||| || ||||| | |||||| || || Sbjct 521656 ATCTTTGCTTTTACATTCTCGATGGTGTCAGAAGCT-TCAACTTCAAGGGTTATGGTCTT 521714 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| ||||||||||| Sbjct 521715 CCCGGTCAATGTCTTCACGAAAATCTGCAT 521744 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| | ||| |||||||| || || ||||| |||||||||||||| ||| Sbjct 519922 CCGCCGCGAAGCCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 519981 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || ||||||| || ||||| |||||||| || || | ||| || || || || Sbjct 519982 AGCGTACGGCCGTCTTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGAGGA 520041 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || || ||| ||| ||| | || ||| | || ||||| ||| || Sbjct 520042 ATGCCTTCTTTATCT-TGAATTTTCGCCTTCACGTTTTCGATCGTGTCCGAAGCCTCAAC 520100 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || |||||||| || | || || |||||||||||||| Sbjct 520101 CTCCAGTGTGATAGTTTTACCAGTGAGAGTCTTGACAAAAATCTGCAT 520148 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || ||| || ||||||||||| || || ||||| || || | |||||| Sbjct 521080 ACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 521139 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || || | ||| || || || || | ||| || |||||| || Sbjct 521140 AGCTGTTTTCCGGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT-TG 521198 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||| || | || ||||| ||| ||||||| || || ||||| Sbjct 521199 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTTTT 521258 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || ||||| || ||||| ||||| Sbjct 521259 TCCGGTCAATGTTTTGACGAAAATTTGCAT 521288 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| || ||| || ||||||||||| || || ||||| || || | |||||| Sbjct 521308 ACCAAATGCAGTGTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 521367 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || ||||| ||||| || || || | ||| || || || || | ||| || |||||| || Sbjct 521368 AGCTGTTTTCCGGCGAAAATCAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT-TG 521426 Query 34618 ATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| ||| || | || ||||| ||| ||||||| || || ||||| Sbjct 521427 AATTTTTGCTTTGACATTTTCGATCGTGTCAGATGCCTCGACTTCCAACGTGATGGTTTT 521486 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||||| ||||| |||||||| Sbjct 521487 TCCTGTCAGGGTTTTGACAAAGATCTGCAT 521516 >seq4552 Length=86203 Score = 143 bits (158), Expect = 2e-29 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| || ||| || |||||||| |||||||| || Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||||||||| || ||||| || | |||||| || ||||| || Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCT-TCGCTCTCCA 34657 | |||||| |||||| ||| ||| | ||| || | ||| |||||| ||| || | Sbjct 3438 ATTCCCTCTTTGTCTTGGAT-TTTGGCTTTCACATTTTCAATAGTGTCTGAAGCT-TCGA 3381 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || |||||||| || | || |||||||| ||||||||| Sbjct 3380 CTTCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCATG 3331 Score = 138 bits (152), Expect = 7e-28 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| ||||| || || ||| || ||||| ||||| || || ||| Sbjct 4242 CCTCCTCGAAGACGCAGAACCAAGTGAAGTGTGGATTCTTTTTGGATGTTGTAGTCGGAA 4183 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||||||||| || || | ||||||||| ||||| || Sbjct 4182 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAGATCAGACGCTGTTGATCCGGTGGA 4123 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT-TCGCTCTCCA 34657 | |||||| ||||| ||| ||| | || ||| | ||| |||||| ||| || | Sbjct 4122 ATTCCCTCTTTGTCCTGGAT-TTTAGCCTTTACGTTTTCAATGGTGTCTGAAGCT-TCGA 4065 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | |||||||| || || ||||| Sbjct 4064 CTTCGAGGGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 4016 Score = 122 bits (134), Expect = 5e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| ||||| || || || |||||||| ||||| Sbjct 3786 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3727 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||| | |||||||| || || || ||||| || ||||| || || Sbjct 3726 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3667 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| |||||| ||||| | |||||||| | || ||| Sbjct 3666 ATGCCTTCTTTGTCTTGGATCTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3607 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||||||||| | |||||||| || || ||||| Sbjct 3606 TCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3560 Score = 120 bits (132), Expect = 2e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || || || || ||||| || || ||||| ||||| ||||| ||| Sbjct 4470 CCTCCGCGAAGTCGTAAAACTAAGTGGAGTGTAGATTCTTTTTGGATGTTGTAATCAGAA 4411 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| || || || || |||||||||||||| || || || Sbjct 4410 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGCTGTTGATCTGGAGGG 4351 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT-TCGCTCTCCA 34657 | ||| || ||||| ||| ||| | || ||| | ||| |||||| ||| || | Sbjct 4350 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTCACGTTTTCAATAGTGTCTGAAGCT-TCGA 4293 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || |||||||| || | |||||||||||||| ||||| Sbjct 4292 CTTCAAGAGTGATGGTTTTACCTGTGAGAGTTTTCACAAAAATTTGCAT 4244 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| |||||||| |||| ||| ||||| || || || |||||||| ||||| Sbjct 4014 CCTCCTCGAAGACGCAGAACCAGATGAAGAGTAGATTCTTTCTGGATGTTATAGTCTGAG 3955 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | ||||||| | |||||||| || || || ||||| || ||||| || || Sbjct 3954 AGTGTCCTACCGTCTTCCAACTGTTTACCAGCGAAGATCAAACGTTGCTGGTCAGGAGGA 3895 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| ||| ||| | ||| ||| | |||||||| | || || Sbjct 3894 ATGCCTTCTTTGTCTTGGAT-TTTAGCTTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3836 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| | || || ||||||||||| | |||||||| || || ||||| Sbjct 3835 TTCAAGAGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314711867249159