Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq4552 100 2e-16
seq3876 98.7 7e-16
>seq4552
Length=86203
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| ||||| ||||| || ||||||||| || || |||| || ||| |
Sbjct 3104 ATGCAAATCTTTGTAAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTGGAAGCTTCT 3163
Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909
||| | || | |||||| || || |||||||||||| |||| || |||
Sbjct 3164 GACACTATAGAGAACGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 3223
Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969
||||| ||||| ||||| ||||| ||| | || || | | | | | ||||||||||||
Sbjct 3224 CAACGTTTAATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACCCTTTCCGATTACAAC 3283
Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||| || || || | ||| | ||| ||||| | ||||| |||
Sbjct 3284 ATCCAGAAGGAATCTACACTTCATCTTGTTCTGCGTCTTCGTGGAGGC 3331
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| || ||||||||||| || || ||| || || |||| || ||| | |
Sbjct 3787 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 3846
Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908
||| || || || ||| ||||| ||||||||||| |||| || ||
Sbjct 3847 TGACACAATAGAAAACGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3906
Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968
|||||| || || || || || ||||| ||||| |||| | | | || || || ||
Sbjct 3907 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3966
Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| ||| | ||| ||||| ||||| | || || ||
Sbjct 3967 CATCCAGAAAGAATCTACTCTTCATCTGGTTCTGCGTCTTCGAGGAGG 4014
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| || ||||||||||| || || ||| || || |||| || ||| | |
Sbjct 3559 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3618
Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908
||| || || || ||| || || ||||||||||| |||| || ||
Sbjct 3619 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3678
Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968
|||||| || || || || || ||||| ||||| |||| | | | || || || ||
Sbjct 3679 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3738
Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| ||||| ||| | ||| ||||| ||||| | || || ||
Sbjct 3739 CATCCAGAAAGAATCTACTCTTCATCTGGTTCTGCGTCTTCGAGGAGG 3786
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/195 (70%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||||||||||||||||||||| || || ||| || || |||| |||||| |
Sbjct 4243 AATGCAAATTTTTGTGAAAACTCTCACAGGTAAAACCATCACTCTTGAAGTCGAAGCTTC 4302
Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908
||| | | || || || ||||| ||||||||||| | || || ||
Sbjct 4303 AGACACTATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCA 4362
Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG--CT-TGTCCGATTA 27965
|| || ||||| || || || || ||| |||| |||| |||| || | || |||||
Sbjct 4363 ACAGCGTTTAATCTTCGCTGGCAAGCAACTGGAAGACG---GCAGAACTCTTTCTGATTA 4419
Query 27966 CAACATCCAAAAAGA 27980
|||||||||||||||
Sbjct 4420 CAACATCCAAAAAGA 4434
>seq3876
Length=890137
Score = 98.7 bits (108), Expect = 7e-16
Identities = 162/231 (70%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| || ||||| ||||| || || || ||| || || | || ||||| |||
Sbjct 521517 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAAACCATCACGTTGGAAGTCGAG-GCAT 521459
Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905
| ||||| | ||| |||||| |||||| ||||||||||| | || ||
Sbjct 521458 CTGACACGATCGAAAAT--GTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGA 521401
Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965
||||| | || ||||| ||||||||||| | || || | |||| | || || ||
Sbjct 521400 TCAGCAGAGATTGATTTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTA 521341
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||||| |||||||| ||| ||||||||||| | ||||| ||||| ||
Sbjct 521340 CAACATTCAAAAAGAATCCACACTGCATTTGGTTCTCCGTTTACGTGGTGG 521290
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||||||||| ||||| || || || || || || | || |||||| || |
Sbjct 520604 ATGCAAATTTTTGTCAAAACGCTCACCGGTAAGACAATCACTCTGGAAGTCGAA-GCGTC 520546
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||||| | || || ||| |||||| ||||| ||||| | || |||
Sbjct 520545 GGACACGATTGAGAAC--GTGAAAGCAAAAATTCAGGACAAGGAAGGAATCCCCCCGGAC 520488
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| |||| || || ||||||||||| | || |||| |||| | || |||||
Sbjct 520487 CAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGACGGTCGCACACTTTCAGATTAT 520428
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || || ||||||||||||||| | ||||| ||||| ||
Sbjct 520427 AACATTCAGAAGGAATCGACTTTGCATTTGGTTCTTCGTTTACGTGGTGG 520378
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||||||||| || ||||| | || || ||| || || | || ||||| ||| |
Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAG-GCATC 521230
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||||| | ||| |||||| |||||| ||||||||||| | || ||
Sbjct 521229 TGACACGATCGAAAAT--GTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGAT 521172
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
||||| | || || || ||||||||||| | || || | |||| | || || |||
Sbjct 521171 CAGCAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTAC 521112
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| |||||||| ||| ||||||||||| | ||||| ||||| ||
Sbjct 521111 AACATTCAAAAAGAATCCACACTGCATTTGGTTCTCCGTTTACGTGGTGG 521062
Score = 82.4 bits (90), Expect = 5e-11
Identities = 160/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| |||||||| || ||||| ||||| ||| ||| ||| | || || || || |
Sbjct 520148 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAG-GCTTC 520090
Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||||| | || || || ||||| || |||||||| |||| ||
Sbjct 520089 GGACACGATCGAAAAC--GTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGAT 520032
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965
||||| |||| || |||||||||||||| | || |||| || | |||| || |||||
Sbjct 520031 CAGCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTT-TCTGATTA 519973
Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || || || |||||||||||||| | | || |||||
Sbjct 519972 TAACATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGGCTTCGCGGCGG 519922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355842349711521
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |