Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31] 4,623 sequences; 267,973,152 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4552 98.7 9e-16 seq3876 98.7 9e-16 seq4069 91.5 1e-13 >seq4552 Length=86203 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | || | |||| ||| || ||| |||||||| ||||||||||| | Sbjct 3558 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATATTATAATCAGAG 3499 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || ||||| |||||||| ||||| || ||||||||||| || | ||| Sbjct 3498 AGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCAAAAATCAGACGCTGCTGATCCGGGGGA 3439 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||||||||| |||||| ||| | | | | || || | || || Sbjct 3438 ATTCCCTCTTTGTCTTGGATTTTGGCTTTCACATTTTCAATAGTGTCTGAAGCTTCGACT 3379 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| |||| ||||| || || || |||||||| ||||| Sbjct 3378 TCGAGGGTGATGGTTTTACCCGTAAGAGTCTTCACAAAGATCTGCAT 3332 >seq3876 Length=890137 Score = 98.7 bits (108), Expect = 9e-16 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || | |||||||| || ||| ||||||| Sbjct 521275 ACGAAAATTTG--CATACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTT 521332 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | ||| || || | || ||||||||||| || || || || | | Sbjct 521333 GAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATCAATC 521392 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 |||||| || | || | | ||||||| | ||| ||| || ||||| | | | | Sbjct 521393 TCTGCTGATCTGGAGGGATTCCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCGATC 521451 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || || | ||| || |||| |||||| ||||||| ||||| ||||| |||||||| Sbjct 521452 GTGTCAGATGCCTCGACTTCCAACGTGATGGTTTTTCCTGTCAGGGTTTTGACAAAGATC 521511 Query 39280 TGCAT 39284 ||||| Sbjct 521512 TGCAT 521516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || | |||||||| | || || || | Sbjct 520363 ACGAAAATTTG--CATTCCACCACGTAAACGAAGAACCAAATGCAAAGTCGATTCCTTCT 520420 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| | |||||| || |||| ||||||||||| || || || || | | Sbjct 520421 GAATGTTATAATCTGAAAGTGTGCGACCGTCTTCAAGCTGTTTTCCGGCGAAGATCAACC 520480 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 ||||||||| | ||| | | || |||||| ||| ||| || ||| | || | | | Sbjct 520481 TCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC-TGAATTTTTGCTTTCACGTTCTCAATC 520539 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || || || || || |||| ||||| | || || || |||||||| ||||| ||| Sbjct 520540 GTGTCCGACGCTTCGACTTCCAGAGTGATTGTCTTACCGGTGAGCGTTTTGACAAAAATT 520599 Query 39280 TGCAT 39284 ||||| Sbjct 520600 TGCAT 520604 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || | |||||||| || ||| ||||||| Sbjct 521047 ACGAAAATTTG--CATACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCTTTTT 521104 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || || | ||| || || | || ||||||||||| || || || || | | Sbjct 521105 GAATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTTCCGGCGAAGATCAATC 521164 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 |||||| || | || | | ||||||| | ||| ||| || ||||| | | | | Sbjct 521165 TCTGCTGATCTGGAGGGATTCCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCGATC 521223 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || || | ||| || |||| |||||| ||||||| |||| ||||| || || ||| Sbjct 521224 GTGTCAGATGCCTCGACTTCCAACGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATT 521283 Query 39280 TGCAT 39284 ||||| Sbjct 521284 TGCAT 521288 Score = 86.0 bits (94), Expect = 5e-12 Identities = 168/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || || | ||| || | |||||||| || ||| || || | Sbjct 520819 ACGAAAATTTG--CATACCACCACGTAAACGGAGAACCAAATGCAGTGTGGATTCCTTCT 520876 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || | |||||| || | || ||||||||||| || ||||| || | | Sbjct 520877 GAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAATC 520936 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACC 39219 ||||| || | || | | ||||||| | ||| ||| || ||||| | | | | Sbjct 520937 TTTGCTGATCCGGAGGGATTCCTTCTTTGT-CTTGAATTTTTGCTTTGACATTTTCGATC 520995 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || || | ||| || |||| |||||| | ||||| |||| ||||| || || ||| Sbjct 520996 GTGTCAGATGCCTCAACTTCCAACGTGATGGTCTTTCCGGTCAATGTTTTGACGAAAATT 521055 Query 39280 TGCAT 39284 ||||| Sbjct 521056 TGCAT 521060 >seq4069 Length=1127261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 ||||||| ||||||||||||| || || ||| | || || || |||||||| || || | Sbjct 161737 CTTTTTGGATATTATAATCGGACAGAGTGCGTCCATCCTCCAGTTGTTTGCCGGCGAAGA 161678 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | || ||||| || || | || | | ||| |||||| ||| || |||| || Sbjct 161677 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCT 161618 Query 39215 CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 | | |||||| | ||| || || | ||||| |||| ||||| || ||||| || | Sbjct 161617 CGATGGTATCGGAGGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 161558 Query 39275 AGATTTGCAT 39284 |||| ||||| Sbjct 161557 AGATCTGCAT 161548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429521398192799