Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trachymyrmex_20zeteki_20[refseq_20GCF_5F001594055.1_202016-03-31]
4,623 sequences; 267,973,152 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4552 168 5e-37
seq3876 138 8e-28
seq4069 125 5e-24
>seq4552
Length=86203
Score = 168 bits (186), Expect = 5e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| ||||| || ||||| ||||| || ||||| |||||||| ||||| || | |
Sbjct 4243 AATGCAAATTTTTGTGAAAACTCTCACAGGTAAAACCATCACTCTTGAAGTCGAAGCTTC 4302
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| |||||| | || |||||| ||||||||||| | || ||||||||
Sbjct 4303 AGACACTATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAAGGAATCCCTCCAGATCA 4362
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||||||| || || ||||| ||||||||||||| | ||| | ||||||||
Sbjct 4363 ACAGCGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAA 4422
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| |||||||| || ||| | || ||||||||| | | || |||||
Sbjct 4423 CATCCAAAAAGAATCTACACTCCACTTAGTTTTACGACTTCGCGGAGG 4470
Score = 138 bits (152), Expect = 8e-28
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| ||||| ||||| || ||||| || || |||||||| || | |
Sbjct 4015 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 4074
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| |||| ||||| |||||||| || | || || |||||
Sbjct 4075 AGACACCATTGAAAACGTAAAGGCTAAAATCCAGGACAAAGAGGGAATTCCACCGGATCA 4134
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||| | || || ||||| |||||||||||||| | | ||| | ||| |||||
Sbjct 4135 ACAGCGTCTGATCTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 4194
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| |||||||| |||||| | || || ||| | | | |||||||||
Sbjct 4195 CATCCAAAAAGAATCCACACTTCACTTGGTTCTGCGTCTTCGAGGAGGA 4243
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || || || ||||| ||||| ||||| |||||||| || | |
Sbjct 3332 ATGCAGATCTTTGTGAAGACTCTTACGGGTAAAACCATCACCCTCGAAGTCGAAGCTTCA 3391
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| |||||| | ||| ||||| |||||||| || | || || |||||
Sbjct 3392 GACACTATTGAAAATGTGAAAGCCAAAATCCAAGACAAAGAGGGAATTCCCCCGGATCAG 3451
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| ||||||||||| ||||| | | ||| | ||||| ||
Sbjct 3452 CAGCGTCTGATTTTTGCTGGCAAACAACTTGAAGATGGCAGAACTCTCTCTGATTATAAT 3511
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| |||||||| |||||| | ||| | ||| | | | |||||||||
Sbjct 3512 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCGTCTTCGAGGAGGA 3559
Score = 111 bits (122), Expect = 1e-19
Identities = 162/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| ||||| ||||| || ||||| |||||||| |||||||| || |
Sbjct 3787 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACTCTTGAAGTTGAAGCCTC 3846
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| ||||| ||||| ||||||||||| | || || || ||
Sbjct 3847 TGACACAATAGAAAACGTAAAAGCTAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3906
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||||| || || || || ||||| ||||||||| | || | || || ||
Sbjct 3907 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3966
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || ||||| || || | ||| | ||| | | | |||||||||
Sbjct 3967 CATCCAGAAAGAATCTACTCTTCATCTGGTTCTGCGTCTTCGAGGAGGA 4015
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || ||||||||||| || ||||| ||||| || || || || | |
Sbjct 3104 ATGCAAATCTTTGTAAAAACCCTCACTGGGAAAACCATCACCCTTGAGGTGGAAGCTTCT 3163
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | ||| || || |||||||||||| | || ||||||||
Sbjct 3164 GACACTATAGAGAACGTCAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 3223
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| |||||||| ||||| || || ||||| || || | | || | ||||||||||
Sbjct 3224 CAACGTTTAATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACCCTTTCCGATTACAAC 3283
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || || || ||| | ||| | |||
Sbjct 3284 ATCCAGAAGGAATCTACACTTCATCTTGTT 3313
Score = 102 bits (112), Expect = 6e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || ||||| ||||| ||||| || ||||| ||||| || |||||||| || |
Sbjct 3559 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3618
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| ||||| || || ||||||||||| | || || || ||
Sbjct 3619 TGACACAATAGAAAACGTAAAAGCTAAGATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3678
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||||| || || || || ||||| ||||||||| | || | || || ||
Sbjct 3679 GCAACGTTTGATCTTCGCTGGTAAACAGTTGGAAGACGGTAGGACACTCTCAGACTATAA 3738
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || ||||| || || | ||| | ||| | | | |||||||||
Sbjct 3739 CATCCAGAAAGAATCTACTCTTCATCTGGTTCTGCGTCTTCGAGGAGGA 3787
>seq3876
Length=890137
Score = 138 bits (152), Expect = 8e-28
Identities = 157/211 (74%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
||||||||| || || |||||||| || |||||||| ||||| | ||||| || | |
Sbjct 521517 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAAACCATCACGTTGGAAGTCGAGGCATC 521458
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | |||| | ||| ||||||| ||||||||||| | || ||||||||
Sbjct 521457 TGACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 521398
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || || ||||| ||||| || ||||| | |||||| | || |||||
Sbjct 521397 GCAGAGATTGATTTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAA 521338
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| |||||||| |||||| | ||||| |||
Sbjct 521337 CATTCAAAAAGAATCCACACTGCATTTGGTT 521307
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| ||||| | || |||||||| ||||| | ||||| || | |
Sbjct 521288 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACGTTGGAAGTCGAGGCATCT 521229
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| ||||||| ||||||||||| | || ||||||||
Sbjct 521228 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCAG 521169
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || || ||||| ||||| || ||||| | |||||| | || ||||||
Sbjct 521168 CAGAGATTGATCTTCGCCGGAAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 521109
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| |||||||| |||||| | ||||| |||
Sbjct 521108 ATTCAAAAAGAATCCACACTGCATTTGGTT 521079
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| || || | || ||||| || ||||| | |||||||| | |
Sbjct 520377 AATGCAAATTTTCGTCAAGACATTAACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTC 520318
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||||| | || ||| | ||| | |||| || ||||| ||||| | || |||||||
Sbjct 520317 GGACACGATCGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAAGGAATCCCTCCAGATC 520259
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||| | || || |||||||| ||||| || ||||||| || || | ||||| |
Sbjct 520258 AGCAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATA 520199
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||| || || || || || | ||||||||||| ||| | || || ||
Sbjct 520198 ACATTCAGAAGGAATCTACCCTGCATTTAGTTTTGAGGCTTCGCGGCGG 520150
Score = 114 bits (126), Expect = 9e-21
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || | || || || || || || || |||||||| | |
Sbjct 521744 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACCCTTGAAGTTGAAGCTTCT 521685
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | || | ||||| ||| || || || |||||| | || || |||||
Sbjct 521684 GACACCATCGAGAATGTAAAAGCAAAGATCCAAGATAAGGAAGGTATCCCACCCGATCAG 521625
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || || || || || || ||||||| ||| || ||| |||||||||
Sbjct 521624 CAGCGTTTGATCTTCGCTGGAAAGCAGCTTGAAGACGGACGTACCTTATCCGATTACAAT 521565
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
|| || || || ||||| | ||||| || | || ||||| || |||
Sbjct 521564 ATTCAGAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGGA 521517
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || ||||| || ||||| ||||| || || ||||| | ||
Sbjct 520148 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 520089
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | || |||||| || |||||||| | || || |||||
Sbjct 520088 GACACGATCGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAG 520029
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || |||||||| ||||| || ||||||| || || | ||||| |||
Sbjct 520028 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAAGACGGCCGTACGCTTTCTGATTATAAC 519969
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| || || || || || | ||||| ||||| ||| | || || ||
Sbjct 519968 ATTCAGAAGGAATCTACCCTGCATTTGGTTTTGAGGCTTCGCGGCGG 519922
Score = 105 bits (116), Expect = 5e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || ||||| || ||||| ||||| || || ||||| | ||
Sbjct 519920 ATGCAGATTTTTGTCAAGACTCTCACTGGTAAAACTATCACACTGGAGGTTGAGGCTTCG 519861
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| |||||| || |||||||| | || || ||||||
Sbjct 519860 GACACGATCGAAAACGTGAAAGCGAAAATTCAGGATAAAGAAGGCATTCCTCCCGATCAA 519801
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | | || || || ||||| || || || || | ||| |||||| ||| || ||
Sbjct 519800 CAAAGACTGATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 519741
Query 23791 ATACAAAAAGAGTCCACA 23808
|| || |||||||| |||
Sbjct 519740 ATTCAGAAAGAGTCTACA 519723
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| ||||| | || ||||| || ||||| | |||||||| | |
Sbjct 521060 ATGCAAATTTTCGTCAAAACATTGACCGGAAAGACCATCACGTTGGAAGTTGAGGCATCT 521001
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| | |||| | ||| ||||||| ||||||||||| | || || |||||
Sbjct 521000 GACACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAAGAAGGAATCCCTCCGGATCAG 520941
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| | || || ||||| || ||||| || ||||| | ||||| | || |||||
Sbjct 520940 CAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 520881
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || || |||||| | ||||| |||
Sbjct 520880 ATTCAGAAGGAATCCACACTGCATTTGGTT 520851
>seq4069
Length=1127261
Score = 125 bits (138), Expect = 5e-24
Identities = 144/191 (75%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||||||||||| ||||| ||||| ||||| || || || |
Sbjct 161548 ATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCCTCC 161607
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | ||||| || || | |||||||||||
Sbjct 161608 GATACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGAATTCCGCCAGATCA 161666
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || ||||||||||||||||| || | ||||||| | |||||| ||
Sbjct 161667 ACAGCGACTCATCTTCGCCGGCAAACAACTGGAGGATGGACGCACTCTGTCCGATTATAA 161726
Query 23790 CATACAAAAAG 23800
|| |||||||
Sbjct 161727 TATCCAAAAAG 161737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337990555588484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |